Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1558 560 1e-154 >seq1558 Length=203828 Score = 560 bits (620), Expect = 1e-154 Identities = 743/1026 (72%), Gaps = 4/1026 (0%) Strand=Plus/Plus Query 6255 TATATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTG 6314 ||||| | |||||||| || | ||| |||||||||||||| ||||| || ||| |||| Sbjct 174570 TATATTATAGAGCGTTACCACGTGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTG 174629 Query 6315 GTTGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTAT 6374 |||| || | |||||||| ||||| | |||||| || | || ||||| || || | Sbjct 174630 GTTGGTCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTAAGAAGAATGTTTTTAGTGT 174689 Query 6375 AGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAG 6434 |||| || ||||| || || || || || || | ||||||||||| || ||||| |||| Sbjct 174690 AGAATGTTTCGAATTCAGGGTCTTCAGCAGCACGAATCTCTTGTGATACGAAGTCGTAAG 174749 Query 6435 CTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAG 6494 | | | ||| || || | ||| | || |||||| | |||||||||| | || | Sbjct 174750 CACGTAAGTTTAGAGCTAAACCTACAACACCAATAGCACTCATCCAAAGACCAGTTACTG 174809 Query 6495 GAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCT 6554 |||| || | ||| ||||| || |||||||| || || ||| || | ||| ||||| | Sbjct 174810 GAACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACCGAAGATTT 174869 Query 6555 GAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAA 6614 | ||||||||||| ||||| || ||||| || || || || || | |||||||| | | Sbjct 174870 GTGACCAGAAACGGTTAGCAGTAACCATAGAGTATGTTTCTTCAGCCTGTGTAGGGTTGA 174929 Query 6615 ACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCAC 6674 | || ||| || || | ||||| ||||| || || || || || |||||||||| Sbjct 174930 ATGCACGGAATGTGTTAGCACCGTCACCGTCTTCGAATAATGTGTTTTCAACAGTAGCAC 174989 Query 6675 CGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACG 6734 ||||||||||||| | || || ||||||| | ||| || ||||||||||| || || | Sbjct 174990 CGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATG 175049 Query 6735 GGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAA 6794 |||| || |||||||||||||| || || | ||| | | ||| ||||| || || || | Sbjct 175050 GGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAAATGAAACGGAAGATAGCAGCTA 175109 Query 6795 CACC-AAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACA 6853 |||| |||| | || ||||||||||||| || || || | || || || || || || Sbjct 175110 CACCGAAACTA-GGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAATACT 175168 Query 6854 GACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACT 6913 || || || |||||||| || | || || || ||||| ||||| ||||| | ||| Sbjct 175169 GAAACGAATACAGCAATTGGTGCTGAGAAAGCAATTGCGTTGTATGGACGTAAGTTTACT 175228 Query 6914 AGACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGC 6973 ||| || || |||||||| |||||||||||||| || | |||| || ||||| | Sbjct 175229 GAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACCAAATGCACCGTGTAAA 175288 Query 6974 GCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCT 7033 || || || | ||||| || |||||||| ||| || |||||| || ||||||||| Sbjct 175289 GCAACGAATGCCCATAAACCACCAAGTTGACACCAACGAGTGAAATCACCTTGAGCTTCT 175348 Query 7034 GGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCA 7093 |||||||| | || || || || || | | | || |||||| || || ||||| || Sbjct 175349 GGACCCCAAACAAATAGAAGAGAGTGAGCCATACTGTTAGCAGGTGTAGAAACAGCTGCT 175408 Query 7094 GTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTG 7153 || | ||| ||||| || || | || |||| ||| | || || || ||||| || Sbjct 175409 GTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGCGTATACCATGAAGTA 175468 Query 7154 ACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGA 7213 |||||||| || || || | |||||| || | ||| | ||||||| |||||| || | Sbjct 175469 ACGAAAGTAGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACAAGGGAATAGTAAT 175528 Query 7214 AGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC-GAGTACATC 7272 | |||||||||||| || || ||||| | || | |||||||||||| | || |||| Sbjct 175529 AAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCCAGTCATCAGCGT-CATC 175587 Query 7273 AAACCA 7278 ||||| Sbjct 175588 GAACCA 175593 Score = 259 bits (286), Expect = 6e-64 Identities = 225/277 (81%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||| | ||| ||||||||||||||||| |||||||||||||| |||||||| || | Sbjct 48802 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 48861 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 ||||||||||| | ||||||||| ||||| || ||||||||||| || | | || Sbjct 48862 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 48921 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT-GGTGCTAACACCAAGAGCAGTGA 7715 |||||||||||||||||||| | |||||||||||| | || ||| ||| | |||||||| Sbjct 48922 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 48980 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 |||| || || | || ||||| || || | ||||||||| | ||||| |||||||||| Sbjct 48981 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 49040 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCC 7812 | ||||||||||||||||| |||||||||||||| || Sbjct 49041 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 49077 Score = 259 bits (286), Expect = 6e-64 Identities = 225/277 (81%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||| | ||| ||||||||||||||||| |||||||||||||| |||||||| || | Sbjct 145401 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 145342 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 ||||||||||| | ||||||||| ||||| || ||||||||||| || | | || Sbjct 145341 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 145282 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGT-GCTAACACCAAGAGCAGTGA 7715 |||||||||||||||||||| | |||||||||||| || | ||| ||| | |||||||| Sbjct 145281 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 145223 Query 7716 ACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 7775 |||| || || | || ||||| || || | ||||||||| | ||||| |||||||||| Sbjct 145222 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 145163 Query 7776 ACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCC 7812 | ||||||||||||||||| |||||||||||||| || Sbjct 145162 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 145126 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 7814 TGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGG 7873 |||||||| || |||||||| || ||||||||||||||||| ||||| | ||| Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || || ||||| |||||||| | | ||| || || || | ||||| ||||| || Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 ||| | |||||||| || |||||||| || || | ||||||||| |||||||| ||| Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGAT 8043 |||||||| ||||||||||| || | |||| ||||||| ||||||||||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 7814 TGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGG 7873 |||||||| || |||||||| || ||||||||||||||||| ||||| | ||| Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || || ||||| |||||||| | | ||| || || || | ||||| ||||| || Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 ||| | |||||||| || |||||||| || || | ||||||||| |||||||| ||| Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGAT 8043 |||||||| ||||||||||| || | |||| ||||||| ||||||||||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 8185 ACCCATGTATGCA-TAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCAC 8243 ||||||||| ||| || | ||| | |||||||| | | | |||||| ||||||||| Sbjct 53781 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 53839 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 ||||||| | |||||| || |||||||| |||||||| || || |||||||| ||||| | Sbjct 53840 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 53899 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 | |||||||||| || | |||||||| | ||||||||||| || || | || |||| Sbjct 53900 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 53959 Query 8364 CAGCGACGGGTTCACGGATGCCGTC 8388 | | || ||||||||||| || || Sbjct 53960 CTGAAACTGGTTCACGGATACCATC 53984 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 8185 ACCCATGTATGCA-TAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCAC 8243 ||||||||| ||| || | ||| | |||||||| | | | |||||| ||||||||| Sbjct 140422 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 140364 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 ||||||| | |||||| || |||||||| |||||||| || || |||||||| ||||| | Sbjct 140363 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 140304 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 | |||||||||| || | |||||||| | ||||||||||| || || | || |||| Sbjct 140303 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 140244 Query 8364 CAGCGACGGGTTCACGGATGCCGTC 8388 | | || ||||||||||| || || Sbjct 140243 CTGAAACTGGTTCACGGATACCATC 140219 Score = 154 bits (170), Expect = 2e-32 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8050 AGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGC 8109 ||||||| |||||||||| |||||||| |||| ||| || || | ||||||||| || || Sbjct 52234 AGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGC 52293 Query 8110 TGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGA 8169 |||||| |||||||| ||||| |||||| |||||| ||||||||||||| |||| |||| Sbjct 52294 TGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGA 52353 Query 8170 AAGTTCCCACTCACG 8184 | |||||||||||| Sbjct 52354 TAATTCCCACTCACG 52368 Score = 154 bits (170), Expect = 2e-32 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 8050 AGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGC 8109 ||||||| |||||||||| |||||||| |||| ||| || || | ||||||||| || || Sbjct 141969 AGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGC 141910 Query 8110 TGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGA 8169 |||||| |||||||| ||||| |||||| |||||| ||||||||||||| |||| |||| Sbjct 141909 TGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGA 141850 Query 8170 AAGTTCCCACTCACG 8184 | |||||||||||| Sbjct 141849 TAATTCCCACTCACG 141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622112684119520