Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1501 109 7e-19 seq1546 104 3e-17 seq1525 89.7 6e-13 seq736 84.2 3e-11 >seq1501 Length=566706 Score = 109 bits (120), Expect = 7e-19 Identities = 293/442 (66%), Gaps = 7/442 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || | |||| |||| | Sbjct 386086 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAGGTC 386027 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | ||||| | |||||| | ||| | || ||| || || ||| | Sbjct 386026 AGCTTGCCAAA-GTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAATGTA 385968 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCA-CATCCTTCATCTTGATTTCCCACACAGTTC 115735 | || || || || ||||| || | || | | | | |||||| |||||||| || Sbjct 385967 GGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCG-CTGCTTGATCTCCCACACCGTCT 385909 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||| || ||| | || || ||||| |||| | | | ||||| ||| Sbjct 385908 TGTACAGCCCCTTGAGCTCCTCGGGGATCTCCAGC---TCCAGCACGGAGCCGTTCGCCG 385852 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 |||| | ||||| || ||||||| || || || || || | || | Sbjct 385851 CCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCGTGCAGCA 385792 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915 |||||| ||||| || ||||| || | || ||| | || |||||||| | | Sbjct 385791 GGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAGG 385732 Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 115975 |||| |||||||||||||| ||||| |||| ||| || | |||||||| |||||||||| Sbjct 385731 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATGG 385672 Query 115976 GTGCCATGAGAAGGCTGTTGCG 115997 |||||| || || |||||| Sbjct 385671 GTGCCACCAGCAGCGAGTTGCG 385650 >seq1546 Length=2252224 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| ||| |||||| | || |||||| |||| || ||||| || | Sbjct 1079623 GTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAGCCCCGGCATCAGGCA 1079564 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||||||||||| || | || || ||||| |||||| ||| |||||||| || Sbjct 1079563 GCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTGGATGCCCTCCACGCA 1079504 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| | | || ||||| || || Sbjct 1079503 GGCGAAGCCCACCAGGCGCTCCGCGAA 1079477 >seq1525 Length=1279724 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || || ||||| || ||||| || |||||| ||| || || ||| |||||| || || Sbjct 79700 CGGTCGAAGCGGCCGGGGCGCAGCAGGGCGGGGTCCAGAATGTCAGCGCGGTTGGTGGCG 79641 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCA 12810 |||||||| | |||||| || | | |||||||||||||||||||||| Sbjct 79640 GCGATGACGATGATGCCGGTGTTGCCCTCGAAGCCATCCATCTCAGTCA 79592 >seq736 Length=4093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| |||||||| | | || || ||| || || ||| ||||| || ||| Sbjct 3673 CGGTCAAATCGACCTGGTCTCAACAGTGCTGGGTCGAGAATTTCAGGCCGGTTGGTGGCC 3732 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || |||| | || |||| | | |||| ||||||||||||||| || | ||| || Sbjct 3733 GCCATGATGATGACGCCCTTGTTAGTATCAAAGCCATCCATCTCAACCAGTAATTGGTTC 3792 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACC---CGCACTGCGTTGCTTACCG 12878 | ||| ||||| |||||||| || ||| || | || |||| | || ||| || Sbjct 3793 AGGGTCTGTTCGCGTTCATCGTTACCGGTCACTGCTCCGAGGGCAC-GAGT--CTTGCCC 3849 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGT 12914 | ||||| | |||||| ||||| | ||| |||||| Sbjct 3850 AGCGCGTCCAGTTCGTCGATGAAGATGATGCACGGT 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495251947280