Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1501 176 7e-39 seq1546 114 2e-20 >seq1501 Length=566706 Score = 176 bits (194), Expect = 7e-39 Identities = 484/723 (67%), Gaps = 24/723 (3%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| |||||||| |||| |||| | ||||| || | ||| Sbjct 386084 CAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAGGTCAG 386025 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| | ||||||||||| |||| | ||| | |||||| ||||| ||| | || Sbjct 386024 CTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAATGTA-GG 385966 Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGA 204062 |||| || || |||||||| | | | || |||| |||||||||||||||||| Sbjct 385965 CGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGT 385906 Query 204063 ACACGTCTCTGGTG-TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGC 204120 ||| | | || | | | | || |||| ||| ||| | | |||||||| | || Sbjct 385905 ACA-GCCCCTTGAGCTCCTCGGG--GATCT--CCAGCTCCAGCACGGAGCCGTTCGCCGC 385851 Query 204121 CATCAGTCTC-ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179 || ||| ||| || || || | ||| ||||||| | | |||| || ||| || Sbjct 385850 CACCAG-CTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCGTGCAGCA 385792 Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 |||| |||||| | || || ||||||||||| | || | | | ||| || Sbjct 385791 GGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAGG 385732 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 || | || || || |||||||||||| | ||||| | |||| ||| |||||||||| Sbjct 385731 TGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATGG 385672 Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCC---TGC---GCTTCAGAG 204353 | |||| ||||| ||||||||||| |||| | || | ||| ||| | Sbjct 385671 GTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATGCGGTTGCGCAGCTCCTCCC 385612 Query 204354 AGGTCCA---GTCGTGCATCG-CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATG 204409 || | || | ||| || || | |||| || ||||||||||||||| ||| | || | Sbjct 385611 AGTTGCAGCGGCCGT-CAACGCCGGTGGGCTTGACGCCCCACATGTCGGGCTGCAGGACG 385553 Query 204410 CCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTG 204469 || || ||||| ||| ||| ||| || || || || ||||||| | Sbjct 385552 CCCTGCGACACTGGCGAGCCGGCGTAGGTCTCGTAGGGGCCGTCACGCTCCGCCAGCTCG 385493 Query 204470 CACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCT-GGC 204528 ||||||| | | || | ||| | | ||| |||||||| || || | || ||| Sbjct 385492 CACGAGGTGCTGAGCGCAGCGTGGTAGACGACCTCGAAGATCTG-GCGGTTCAGCTCGGC 385434 Query 204529 GGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCAC 204588 |||||| | ||| || |||| ||||||| | || |||||||| ||||||||| Sbjct 385433 GGCCTCGGGCGAGTCGAAGGCCATGCCCAGCAGGATGAAGGTGTCCGCCAGGCCCTGCAC 385374 Query 204589 TCC 204591 || Sbjct 385373 GCC 385371 >seq1546 Length=2252224 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||| | ||| || |||||||||||||| |||||||| || ||||| ||||||||| Sbjct 2099832 AACAGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 2099891 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACC 160032 | | ||||||| ||||||| || ||| |||||||| || |||| ||| || | || Sbjct 2099892 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCC 2099950 Query 160033 GCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 | || || || |||||||||||||| || ||||| || | ||| Sbjct 2099951 GGAGAAGAAAATGCCCTCCACGGCCGCGAAGGCCACCAGGCGCTC 2099995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139714352480