Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1491 113 1e-19 seq1535 100 7e-16 seq1505 91.5 3e-13 >seq1491 Length=442363 Score = 113 bits (124), Expect = 1e-19 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| |||||||||||||| || Sbjct 109826 CGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 109767 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 109766 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 109717 Score = 113 bits (124), Expect = 1e-19 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| |||||||||||||| || Sbjct 110209 CGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 110150 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| ||||||||||| || |||||||||||||| Sbjct 110149 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 110100 >seq1535 Length=1731330 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1340470 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 1340529 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| || ||||| || ||||||||||||||||| Sbjct 1340530 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGG 1340579 >seq1505 Length=619805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| |||| || | || || ||||||||||| |||||||||| Sbjct 502901 CCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 502960 Query 199500 TGAGACGCTGCTGGTCCGGA 199519 | |||||||||||||||||| Sbjct 502961 TCAGACGCTGCTGGTCCGGA 502980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178898066514386