Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1491 96.9 4e-15 seq1535 93.3 5e-14 >seq1491 Length=442363 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 109820 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 109761 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| |||||||||||| Sbjct 109760 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 109720 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 110203 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 110144 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| |||||||||||| Sbjct 110143 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 110103 >seq1535 Length=1731330 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || ||||| || Sbjct 1340476 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 1340535 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| ||||||||||| Sbjct 1340536 TCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTC 1340576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227391982160