Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1546 150 2e-31 seq1535 109 5e-19 seq1491 98.7 1e-15 >seq1546 Length=2252224 Score = 150 bits (166), Expect = 2e-31 Identities = 133/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| || ||| || |||||||| |||| ||||||||| | | ||||| |||||| Sbjct 2099830 TGAACAGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGG 2099889 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | |||||||||||||||||| || |||||||| || |||| | ||| || Sbjct 2099890 AGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGC 2099949 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| | |||||| ||||||||||| |||||||||||||| Sbjct 2099950 CGGAGAAGAAAATGCCCTCCACGGCCGCGAAGGCCACCAGGCGCTC 2099995 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 133162 CGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATT 133221 ||||||||| ||| | || ||| ||||| || ||| ||||||||||||||||| Sbjct 1079075 CGCACGTAGTGGTCCAGCAGCACCGAGTACATCTCGCTGTGCACGTTCTCCATGGCGATC 1079016 Query 133222 TGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || |||||||| ||| |||||||| |||||| | || ||| ||| | || Sbjct 1079015 TGGAAGCCGTAGAAGGCGCGCGCCTCCGGCACCTGGATGTCGCTCATGAAGCGCGCCGCC 1078956 Query 133282 AGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 || || || | || |||||||||||||||||||| || |||||||||| ||||||||| Sbjct 1078955 AGGTTCTCCATCACAATGCCGTCGCTGGCGGCGAAGAATGCCAGCACGTACTTGATGAA 1078897 Score = 105 bits (116), Expect = 7e-18 Identities = 176/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 132893 AGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCA 132952 |||| || |||||||| |||| ||||||||||| | ||||| ||||| ||| | || Sbjct 1079639 AGCACGCGAAGTCGCAGTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACA 1079580 Query 132953 AGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGA 133012 || ||||| |||| ||| || || | ||| || |||| | ||| ||| || ||| Sbjct 1079579 GCCCCGGCATCAGGCAGCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGT 1079520 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG- 133071 || |||||| ||| ||||| ||||||||||||| ||||| | || | | Sbjct 1079519 GGATGCCCTCCACGCAGGCGAAGCCCACCAGGCGCTCCGCGAACACG-----TTGGAGGA 1079465 Query 133072 GC-GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATG 133128 || ||||||||||| ||||| || ||| ||||| | ||| || || || | |||| Sbjct 1079464 GCTGATCCAGCGCATGGCCCACTCCGCC--TTCTTAGCCACGGTGGGGATGGTGTGGATG 1079407 Query 133129 GCGTTCAACA 133138 |||| |||| Sbjct 1079406 GCGTCGAACA 1079397 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| || |||||| || | ||| || | |||| || || ||||||||||| Sbjct 2100495 CCTCGGGCAGCTGCACCTCCTTCATGAAGCGGATGGCCAGGTTCTCCAGGACGATGCCGT 2100554 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 |||| |||||||| |||||||| || ||| ||||| ||||||||| ||| || Sbjct 2100555 CGCTAGCGGCGAAGAAGGCCAGAACATGCGAAATGAAGTGGCGCTCGCCGTCCGACAGCT 2100614 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 |||||||| | |||| | | |||||| |||||||| Sbjct 2100615 TCTCCCAGTGCTTCATGTCGTCGCCCAGGTCGACCTCCTC 2100654 >seq1535 Length=1731330 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || |||| ||||||||| |||||||| |||| ||| Sbjct 1340588 GGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1340529 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||||||||||||| ||||| | || ||||| |||||||||| Sbjct 1340528 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 1340476 >seq1491 Length=442363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 110091 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 110150 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| |||| ||||| |||||||||| || | Sbjct 110151 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 110210 Query 38466 GGCGGCC 38472 || |||| Sbjct 110211 GGTGGCC 110217 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 109708 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 109767 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| |||| ||||| |||||||||| || | Sbjct 109768 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 109827 Query 38466 GGCGGC 38471 || ||| Sbjct 109828 GGTGGC 109833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163059134720