Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1550 96.9 4e-15 >seq1550 Length=2811283 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| || ||||| | || | || ||| |||||||| | || | | Sbjct 1065947 ACTTGCGGCCGATCAGGCGCTTGACGTCGTAGACGGTGCGCTTGGGGTTGACGGTAGCCT 1065888 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || ||||| ||||| || || || | | | || || || || ||||| | Sbjct 1065887 GGTTCTTGGCAGCGTCTCCGATCAGGCGCTCCTCGT---CGGTGAAGGCCACATACGAGG 1065831 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || | || || || ||||||||||||||||| || || ||| |||| | | |||| Sbjct 1065830 GAGTGATGCGGTTGCCCTGGTCGTTCGCAATAATCTCCACACGGCCGTTCTTGTACACGC 1065771 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || || || |||| || ||||| || Sbjct 1065770 CCACGCAAGAGTAGGTCGTGCCTAGGTCGATACCAAT 1065734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/217 (70%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| || ||||| | || | | ||| |||||||| | || | | Sbjct 1052630 ACTTGCGGCCGATCAGGCGCTTGACGTCGTAGATGGTGCGCTTGGGGTTGACGGTAGCCT 1052689 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || ||||| ||||| || || || | | | || || || || ||||| | Sbjct 1052690 GGTTCTTGGCAGCGTCGCCGATCAGGCGCTCCTCGT---CGGTGAAGGCCACATACGAGG 1052746 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || | ||||| || ||||||||||| ||||| || || ||| |||||| | |||| Sbjct 1052747 GAGTGATGCGATTGCCCTGGTCGTTCGCGATAATCTCCACACGGCCGTTTTTGTACACGC 1052806 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || || || || | || ||||| || Sbjct 1052807 CCACGCAAGAGTAGGTCGTGCCCAGGTCGATACCAAT 1052843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120430788720