Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1546 107 2e-18 seq1501 89.7 6e-13 seq1529 84.2 3e-11 seq1481 84.2 3e-11 seq1471 84.2 3e-11 >seq1546 Length=2252224 Score = 107 bits (118), Expect = 2e-18 Identities = 252/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || ||||| || || || | || || | ||| | ||| |||||| Sbjct 1467344 CGGTCGAAGCGGCCGGGGCGCAGCAGCGCCTGGTCCAGCACGTCGGGCCTGTTGGTAGCG 1467285 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | | ||| || | ||||| |||||||| || || || ||||||||| Sbjct 1467284 GCCAGCACGATGACGCCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTG 1467225 Query 11623 ATCGTCTGTTCACGCTCATCGTT---GGAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 || ||||| || ||||| ||||| | | ||| ||| | |||| |||| || Sbjct 1467224 ATGGTCTGCTCGCGCTCGTCGTTGCCGCCGCCCATGCCAGC-GCCG--CGCTGGCGGCCC 1467168 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTCGAA 11738 || ||||| |||||||| ||||| | ||| || || |||| || | |||| ||||| Sbjct 1467167 ACGGCGTCGATCTCATCAATGAAGATGATGCAGGGCGCCTTGG-ACTTGGCCTTCTCGAA 1467109 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || || || |||||| || || || || ||||||| ||| ||||| | | ||| | Sbjct 1467108 CAGGTCGCGCACACGCGAGGCACCCACGCCCACGAACACCTCCACGAACTCGGAGGCGGC 1467049 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || | |||||| | |||||| || | ||| || || || |||||||| Sbjct 1467048 GCAGGAGAAGAAGGGGGTGCCGGCCTCACCGGCCACGGCCTTGGCCAGCAGGGTCTTACC 1466989 Query 11859 CGTACCAGGTGCACC 11873 ||||| || | ||| Sbjct 1466988 GGTACCGGGGGGACC 1466974 >seq1501 Length=566706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 || |||| |||||||||| || || || | || ||| || | ||||||||| | Sbjct 385792 AGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAG 385733 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 |||||||| || || ||||| |||||||| ||||| || | ||||| || ||||||||| Sbjct 385732 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATG 385673 Query 109825 GGAGCCA 109831 || |||| Sbjct 385672 GGTGCCA 385666 >seq1529 Length=1469465 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 1040016 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 1039961 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 1040247 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 1040302 >seq1481 Length=384906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 251711 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 251766 >seq1471 Length=305747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 73253 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 73308 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 93402 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 93457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 94651 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 94706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 95432 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGATCCC 95377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964529692400