Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1546 95.1 1e-14 seq1501 93.3 5e-14 >seq1546 Length=2252224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||| || || || || |||||| ||||| |||||||| || Sbjct 2099855 GTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 2099914 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| || ||||||||||| || |||||||| Sbjct 2099915 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGGAGAAGAAAATGCCCTCCACGGC 2099974 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||| || || | |||||||| | ||| Sbjct 2099975 CGCGAAGGCCACCAGGCGCTCCGAGAA 2100001 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||| || || | || |||||| | || || ||||| || | Sbjct 1079623 GTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAGCCCCGGCATCAGGCA 1079564 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || | |||||| || ||||||||| ||| |||||||| || Sbjct 1079563 GCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTGGATGCCCTCCACGCA 1079504 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA 117431 || || | | |||||||| ||||| Sbjct 1079503 GGCGAAGCCCACCAGGCGCTCCGCGAA 1079477 >seq1501 Length=566706 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| || || |||| |||||| | ||| || || |||| |||| ||| Sbjct 384935 GTGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 384876 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| |||||| |||||||| ||||||||||| | || |||||| ||| Sbjct 384875 TTGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGG 384816 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 106683 | || || || || ||||| | | || || | || | | | | || ||||| Sbjct 384815 GCCTCCAGGATGGCAAACCACAGCTGCTGC-GCGCGCACCACGCGGCGCGAGCGGCCCTC 384757 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTG 106742 | ||||||||| ||| ||| ||||||||||||||| | || ||||| || || | Sbjct 384756 CTGCTCGTACTTGAGGTACAGGCGCTCAAACTCCTCACCC-CAGCAGTCGGCCAGGCCGG 384698 Query 106743 GTGCCTTGTCTGGACAGAAAAG 106764 | |||| || || ||||| || Sbjct 384697 GCGCCTCGTTGGGGCAGAACAG 384676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969310123920