Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1558 581 4e-161 >seq1558 Length=203828 Score = 581 bits (644), Expect = 4e-161 Identities = 730/1002 (73%), Gaps = 0/1002 (0%) Strand=Plus/Minus Query 181435 TGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTT 181494 ||||||||||||| | ||||| || || || || || ||||| || || | || || Sbjct 175579 TGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATT 175520 Query 181495 TCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTG 181554 || |||||| ||||| | || || ||| | ||||| |||||||| ||||| || || Sbjct 175519 CCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATG 175460 Query 181555 GTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 181614 ||| || || || || || |||| ||| | || ||| ||| ||| | ||||| ||||| Sbjct 175459 GTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 175400 Query 181615 GTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCA 181674 || || |||||| || ||||| ||| |||||||| | |||||||||| |||||||| Sbjct 175399 TTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 175340 Query 181675 GGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 181734 || |||||| || ||| |||||||| || | ||||| || || || | ||||| Sbjct 175339 AGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGG 175280 Query 181735 AGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGGAAT 181794 || || | | | || ||||| ||||| | || |||||| |||||||| | | | Sbjct 175279 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGTTCAGTAAACTT 175220 Query 181795 CCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCT 181854 || || ||||| || |||||||| || | || |||||||||||||| || ||||| || Sbjct 175219 ACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATTCCT 175160 Query 181855 CATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGAT 181914 || || || | || ||||| ||||||||||||| || ||||||||||| || || || Sbjct 175159 AATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGCTAT 175100 Query 181915 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 181974 ||||| ||| || | ||| |||| || || || || ||||| || || || ||||| || Sbjct 175099 CTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACAT 175040 Query 181975 GATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGT 182034 |||||||||||||||| | | |||| || ||| | | ||| |||||||||| || || Sbjct 175039 GATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGT 174980 Query 182035 GGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAAC 182094 || || || | | ||||||||||| || || || ||| |||||| | | || Sbjct 174979 TGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACCCTAC 174920 Query 182095 TCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGG 182154 || | |||||||| || || |||||||| || ||||| |||||||| || |||||||| Sbjct 174919 ACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTTCGG 174860 Query 182155 TATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGG 182214 | |||| || || || | ||| | || ||||| ||| | || ||||| || | || Sbjct 174859 TGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAACTGG 174800 Query 182215 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 182274 |||||||| ||| | || ||| || | ||| | ||||| ||| | |||||||| ||||| Sbjct 174799 TCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGACTT 174740 Query 182275 TGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAA 182334 ||||| ||||| || | || | |||||||| || ||||| || |||||||| || || Sbjct 174739 CGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAAAAA 174680 Query 182335 CATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAA 182394 |||||| | || |||||| | ||||| ||| | || | || |||||||| || Sbjct 174679 CATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGAACG 174620 Query 182395 CTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || || |||||||| ||||||||||| | |||||||| || Sbjct 174619 TTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Score = 239 bits (264), Expect = 5e-58 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 180454 ATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTC 180513 |||| ||||| |||||||| |||||||| || || || ||||||||||| |||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 180514 ACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 180573 |||||||| | || || ||||| || | || || ||||||||||| | || || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 180574 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTC 180633 | |||||||||||| | |||||||||||||||||||| || | | || ||||||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 180634 GTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 180693 |||| || ||||||||||||||| | ||||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 180694 ACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725 |||||||||| |||||||||||||| || ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 48808 Score = 239 bits (264), Expect = 5e-58 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 180454 ATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTC 180513 |||| ||||| |||||||| |||||||| || || || ||||||||||| |||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 180514 ACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 180573 |||||||| | || || ||||| || | || || ||||||||||| | || || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 180574 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTC 180633 | |||||||||||| | |||||||||||||||||||| || | | || ||||||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 180634 GTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGC 180693 |||| || ||||||||||||||| | ||||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 180694 ACGAGCGTAATGCTCACAACTTCCCACTTGAC 180725 |||||||||| |||||||||||||| || ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 145395 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || ||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || ||||||||| | || || || ||||| ||||| |||||| | ||||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| | ||||| || || | | |||||||| ||||||| || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 |||||| || |||||||||||||| || |||||||| || ||||| ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || ||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || ||||||||| | || || || ||||| ||||| |||||| | ||||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| | ||||| || || | | |||||||| ||||||| || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 |||||| || |||||||||||||| || |||||||| || ||||| ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 179880 GATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 179939 ||||| ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 179940 GCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 179999 || || | || |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 180000 TCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTG 180059 || || ||||||||| | || ||||||||||||| ||||||| |||| | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 180060 ATTGGCATCTATGCCTACATGGGT 180083 | || | || |||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 165 bits (182), Expect = 1e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 179880 GATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 179939 ||||| ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 179940 GCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 179999 || || | || |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 180000 TCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTG 180059 || || ||||||||| | || ||||||||||||| ||||||| |||| | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 180060 ATTGGCATCTATGCCTACATGGGT 180083 | || | || |||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 180084 CGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCT 180143 |||||||||||| | |||| || || |||||||| || |||||| ||||| || || Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 180144 GCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTC 180203 |||||||| |||||||| || ||||||||| | || || ||| |||| |||||||||||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 180204 TCTGACGCAATGCC 180217 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 180084 CGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCT 180143 |||||||||||| | |||| || || |||||||| || |||||| ||||| || || Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 180144 GCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTC 180203 |||||||| |||||||| || ||||||||| | || || ||| |||| |||||||||||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 180204 TCTGACGCAATGCC 180217 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610384912522320