Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1558 558 4e-154 >seq1558 Length=203828 Score = 558 bits (618), Expect = 4e-154 Identities = 727/1009 (72%), Gaps = 21/1009 (2%) Strand=Plus/Minus Query 170558 AGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATC 170617 ||| ||||| |||||| |||| ||||| ||| | ||||| | |||||||| ||| | | Sbjct 175561 AGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTCCCTTGTGCTTACTTTGC 175502 Query 170618 AATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGC 170677 | | ||||||||||| || ||||| |||||||| ||||||||||| |||||| | || Sbjct 175501 ATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGGTATACGCATGGTTTAGC 175442 Query 170678 TTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGC 170737 | | || || | || || ||||||||| |||||||||| ||||| ||||||| || Sbjct 175441 TACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCTACACCTGCTAACAG 175382 Query 170738 AATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTG 170797 |||| ||| |||||| || ||||||| || ||||| |||||| || |||||| Sbjct 175381 TATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAAGGTGATTTCACTCGTTG 175322 Query 170798 GTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG 170857 || ||||| || ||||||||| || || || ||||| || | ||||| | || || Sbjct 175321 GTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGTGCATTTGGTTTAATTGG 175262 Query 170858 TTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACT 170917 ||||||||| | || ||||| || || | ||| | | | || ||||||||| | Sbjct 175261 TTTCATGCTTCGTCAGTTTGAAATTGCTCGTTCAGTAAACTTACGTCCATACAACGCAAT 175202 Query 170918 CGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCA 170977 || ||||| || || || || ||| | | || || || || ||| ||||||| Sbjct 175201 TGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCA 175142 Query 170978 GCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATT 171037 |||||||||| ||||| |||||||| || || || || |||| || ||||| Sbjct 175141 ATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATT 175082 Query 171038 CATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAAT 171097 | | ||||||||||||||| ||| | || ||||| ||||||||||||||||| || | Sbjct 175081 CTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGTGTTGCTGGTGT 175022 Query 171098 ACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGA 171157 |||||| || ||||||||||| ||||| ||||| || || | |||||||| | || Sbjct 175021 TTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTCGA 174962 Query 171158 AGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCC 171217 |||| | | | || ||| ||||||||||| || | || Sbjct 174961 AGAC------GGTGACGGTGCTAA---------------CACATTCCGTGCATTCAACCC 174923 Query 171218 TACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATT 171277 |||||||| |||||||| ||| |||| |||| || ||| | ||||||||||| || || Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 171278 TGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCAT 171337 ||| ||||||||||||||||| | | | |||||| | ||||| || ||||| || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 171338 GGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGA 171397 ||| | |||| |||| ||| | |||||| |||| || ||| | | || ||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 171398 TTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAA 171457 || ||||| |||||||| | || || |||||||| || ||||| || ||||||||||| Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 171458 GAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGA 171517 || || |||||||| |||||||| | || |||||| | | ||||||||||| || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 171518 GAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || |||||||| |||||||| |||||| | |||||||| || ||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAA 174574 Score = 199 bits (220), Expect = 5e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 ||||| |||||||||||||| ||| |||| ||||||||||| || ||||| || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCAT 169998 || ||||||||| ||| || || || | ||||| || || ||||||||||| ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 169999 GGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTAT 170058 ||||| | |||||||||||| ||||| | |||||||| || | || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 170108 ||||| ||||| |||||||||||||| |||||||| ||||| || || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 199 bits (220), Expect = 5e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 ||||| |||||||||||||| ||| |||| ||||||||||| || ||||| || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCAT 169998 || ||||||||| ||| || || || | ||||| || || ||||||||||| ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 169999 GGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTAT 170058 ||||| | |||||||||||| ||||| | |||||||| || | || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 170108 ||||| ||||| |||||||||||||| |||||||| ||||| || || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 170 bits (188), Expect = 2e-37 Identities = 216/294 (73%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 170110 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACAC 170169 ||||||||||||||||| |||||||| || ||||| ||||||||||| | ||||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 170170 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACA 170229 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 170230 ATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAA 170289 |||||||||||||| || ||||||||||| ||||||||||| || || || || || Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---AAG 48903 Query 170290 ATCGT---CCCAACA--TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTA 170344 |||| | |||| |||| || | | ||| | || ||||| ||||||||||| | Sbjct 48902 GTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 48843 Query 170345 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTA 170398 |||| || | || || ||||||||||| |||||| |||| || || | |||| Sbjct 48842 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 48789 Score = 170 bits (188), Expect = 2e-37 Identities = 216/294 (73%), Gaps = 10/294 (3%) Strand=Plus/Plus Query 170110 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACAC 170169 ||||||||||||||||| |||||||| || ||||| ||||||||||| | ||||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 170170 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACA 170229 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 170230 ATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAA 170289 |||||||||||||| || ||||||||||| ||||||||||| || || || || || Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---AAG 145300 Query 170290 ATCGT---CCCAACA--TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTA 170344 |||| | |||| |||| || | | ||| | || ||||| ||||||||||| | Sbjct 145301 GTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 145360 Query 170345 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTA 170398 |||| || | || || ||||||||||| |||||| |||| || || | |||| Sbjct 145361 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 145414 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 169801 |||||||| |||| | | | ||||| |||||||| |||||| ||| || ||||| || | Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 169802 CAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTG 169861 ||||| |||| || | |||||||||||||| ||||| | || || ||||||||||||| Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 169862 ATGGTATGCCACTAGGT 169878 | |||||||| ||||| Sbjct 52244 ACGGTATGCCTTTAGGT 52228 Score = 125 bits (138), Expect = 8e-24 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 169534 GACGGAATCAGAGAACCAGTAGCGGGTTCT-TTCTTGTATGGTAACAACATCATCTCTGG 169592 || || ||| | |||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 53926 Query 169593 TGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGC 169652 ||| || | ||| | || ||||| ||||| || |||||||||||||| |||||||| || Sbjct 53925 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 53866 Query 169653 AACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 169712 || | || || ||||| || || ||||||||||| || | | | | |||||||| Sbjct 53865 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Query 169713 TATTGGTATCT-CAGCATACATGGG 169736 | | ||| | | | || |||||||| Sbjct 53805 TCTAGGTGTATACTGC-TACATGGG 53782 Score = 125 bits (138), Expect = 8e-24 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 169534 GACGGAATCAGAGAACCAGTAGCGGGTTCT-TTCTTGTATGGTAACAACATCATCTCTGG 169592 || || ||| | |||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 140277 Query 169593 TGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGC 169652 ||| || | ||| | || ||||| ||||| || |||||||||||||| |||||||| || Sbjct 140278 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 140337 Query 169653 AACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 169712 || | || || ||||| || || ||||||||||| || | | | | |||||||| Sbjct 140338 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Query 169713 TATTGGTATCT-CAGCATACATGGG 169736 | | ||| | | | || |||||||| Sbjct 140398 TCTAGGTGTATACTGC-TACATGGG 140421 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 169801 |||||||| |||| | | | ||||| |||||||| |||||| ||| || ||||| || | Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 169802 CAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTG 169861 ||||| |||| || | |||||||||||||| ||||| | || || ||||||||||||| Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 169862 ATGGTATGCCACTAGGT 169878 | |||||||| ||||| Sbjct 141959 ACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579201519830720