Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1558 571 7e-158 >seq1558 Length=203828 Score = 571 bits (632), Expect = 7e-158 Identities = 736/1016 (72%), Gaps = 0/1016 (0%) Strand=Plus/Minus Query 169304 TGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCT 169363 |||||||||| ||||||||||| | ||||| || |||||| | |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 169364 GGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCG 169423 ||| || | || | || ||| || |||| | || || ||| | |||||||| | Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 169424 TTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || |||||||| ||||| || || || | ||| | |||||||||||| ||||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || ||||| |||||||||| || ||||| ||||| || || || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||||||||| ||||| |||||| ||| ||||||||| | |||||| | ||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || | || |||||||||| || ||||||||||||||| | ||||||||| | || Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 ||| | | | ||||| || || || ||||| ||||| | || ||||||||||| Sbjct 175233 CGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTC 175174 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || || || || || |||||| | || || || ||||||||||| || || Sbjct 175173 GTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTC 175114 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| | || |||||| | ||| | || ||| | ||||| |||||||||||||| | Sbjct 175113 GGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTT 175054 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || |||||||||||||||||||| || || | || || | || || | | |||||| Sbjct 175053 AACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATT 174994 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 || |||| ||| || || |||||||| | ||||||||||| || || || ||| Sbjct 174993 CACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGT 174934 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || || | | ||||||| ||||| || || |||||||| ||||| ||||| |||||| Sbjct 174933 GCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGG 174874 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||||||| |||| || |||||||| ||||||||||| || |||||||| || Sbjct 174873 TCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTA 174814 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | |||||||||| ||||||| || | || | ||||| || | Sbjct 174813 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTA 174754 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 ||||||||||| ||||| || ||||| | || || ||||| || ||||| || || Sbjct 174753 CGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACA 174694 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||| |||||||| || | || ||||| ||||||| ||| |||| || || Sbjct 174693 TTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGAC 174634 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 |||||||| ||| || | ||||| |||||||| | || | |||||||| || Sbjct 174633 CAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Score = 228 bits (252), Expect = 9e-55 Identities = 213/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 168569 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 168628 |||||||||| |||||| | ||||||||||||||||| ||||||||||| || || || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 168629 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 168688 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 168689 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 168748 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 168749 GTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGC 168808 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 168809 ATGAGCGTAACGCACACAACTTCCCACTCGA 168839 | ||||||||||| ||||||||||| || || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 228 bits (252), Expect = 9e-55 Identities = 213/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 168569 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 168628 |||||||||| |||||| | ||||||||||||||||| ||||||||||| || || || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 168629 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 168688 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 168689 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 168748 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 168749 GTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGC 168808 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 168809 ATGAGCGTAACGCACACAACTTCCCACTCGA 168839 | ||||||||||| ||||||||||| || || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 ||||| || || ||||||| |||| | || |||||||| || ||||| || || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || ||||| ||| | || |||||||| ||||| ||||| || || ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || ||| |||||||| ||| | | | || || ||||||| |||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 168570 |||||| ||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 ||||| || || ||||||| |||| | || |||||||| || ||||| || || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || ||||| ||| | || |||||||| ||||| ||||| || || ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || ||| |||||||| ||| | | | || || ||||||| |||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 168570 |||||| ||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 154 bits (170), Expect = 2e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 167995 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 168054 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 168055 GCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCA 168114 || || |||| ||||||| || || || ||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 168115 TCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTC 168174 || || || |||||||| || ||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 168175 ATCGGTATCTA-TGCATACATGGG 168197 | ||| | || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 154 bits (170), Expect = 2e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 167995 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 168054 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 168055 GCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCA 168114 || || |||| ||||||| || || || ||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 168115 TCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTC 168174 || || || |||||||| || ||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 168175 ATCGGTATCTA-TGCATACATGGG 168197 | ||| | || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 168199 CGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCT 168258 ||||| |||||| | || | |||||||||||||||||||||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 168259 GCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTC 168318 || ||||| |||||||| || |||||| |||| || ||| |||| |||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 168319 TCTGATGCAATGCC 168332 ||||| | ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 168199 CGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCT 168258 ||||| |||||| | || | |||||||||||||||||||||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 168259 GCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTC 168318 || ||||| |||||||| || |||||| |||| || ||| |||| |||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 168319 TCTGATGCAATGCC 168332 ||||| | ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 167981 CCCCTGTGGACATC 167994 | || || |||||| Sbjct 55247 CGCCAGTAGACATC 55234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 167981 CCCCTGTGGACATC 167994 | || || |||||| Sbjct 138956 CGCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574462412126640