Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1558 589 2e-163 >seq1558 Length=203828 Score = 589 bits (652), Expect = 2e-163 Identities = 743/1020 (73%), Gaps = 8/1020 (1%) Strand=Plus/Minus Query 165191 TGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 165250 |||||||||| | |||||||||||| | ||| |||||||| || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 165251 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 165310 || | | || || || |||||| |||| | || |||||| | ||||| |||||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 165311 TTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTT 165370 |||| || |||||||| || || || || | ||| || | || ||| ||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 165371 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGG 165430 | || || || |||||||| || || || ||||| ||| |||||||| || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 165431 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTT 165490 ||||| || |||||||| |||||| | ||| |||||||| || | ||||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 165491 GTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCA 165550 || || | ||||| || || | | ||||||||||||||||||||||||||||| | || Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 165551 CGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 165606 ||| || ||| | ||||| ||||| || ||||| ||||| | || || ||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 165607 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 165666 || ||| || || || || ||||| | |||||||| ||||||| || || || Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAG 175118 Query 165667 TTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 165726 |||||| || || || |||||| | ||| || | ||| | ||||| ||||| |||||||| Sbjct 175117 TTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGAC 175058 Query 165727 CTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 | || || || || |||||||||||||| ||| | | |||| ||| || | | ||| Sbjct 175057 ACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 174998 Query 165787 CATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 || || |||| ||| || || || || | | |||| ||||||| ||| || || || Sbjct 174997 TATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATT 174938 Query 165847 CAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTT 165906 | ||||| || |||| || | |||||||| ||||| ||||||||||| |||||||| Sbjct 174937 CCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTT 174878 Query 165907 CTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 165966 |||||| || ||||||||| |||| || ||| || | ||| | || ||||| ||| | Sbjct 174877 CTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTT 174818 Query 165967 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166026 || ||||| || | |||||||||| ||| | || ||| || | ||| | ||||| || Sbjct 174817 ATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA 174758 Query 166027 CCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGA 166086 | | |||||||| ||||| ||||| |||||||| | || || |||||||| || || || Sbjct 174757 CTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGA 174698 Query 166087 AACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGT 166146 ||| |||||||| ||||||||||| | || |||||| ||||||||||| |||| | Sbjct 174697 AACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 174638 Query 166147 CGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||| || || || || |||||||||||||| | || | |||||||| || Sbjct 174637 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Score = 269 bits (298), Expect = 3e-67 Identities = 221/269 (82%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 |||||| | ||||| ||||| || | || || |||||||| || | ||| | || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164672 |||||||||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 164673 GTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 164732 || || ||||||||||||||| | ||||||| ||| | ||||||||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 164733 GAGCGTAACGCTCACAACTTCCCTCTGGA 164761 |||||||||||||||||||||||||| || Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 269 bits (298), Expect = 3e-67 Identities = 221/269 (82%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 |||||| | ||||| ||||| || | || || |||||||| || | ||| | || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164672 |||||||||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 164673 GTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 164732 || || ||||||||||||||| | ||||||| ||| | ||||||||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 164733 GAGCGTAACGCTCACAACTTCCCTCTGGA 164761 |||||||||||||||||||||||||| || Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 164262 ATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCAC 164321 |||||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 164322 CCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164381 || ||||| ||| | || |||||||| ||||| || ||||| | ||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 164382 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTAT 164441 |||||| | |||||||| || | | |||||||| || |||| || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 164442 GGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCA 164491 |||||| || ||||||||||||||||| ||||||||||| || ||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 164262 ATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCAC 164321 |||||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 164322 CCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164381 || ||||| ||| | || |||||||| ||||| || ||||| | ||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 164382 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTAT 164441 |||||| | |||||||| || | | |||||||| || |||| || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 164442 GGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCA 164491 |||||| || ||||||||||||||||| ||||||||||| || ||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 174 bits (192), Expect = 2e-38 Identities = 163/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 163917 GATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGT 163976 |||||||| |||||||| ||| ||||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 163977 GCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCA 164036 || || | || | || || ||||| ||||||||||||||||| ||||||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 164037 TCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTG 164096 || || || || ||| | |||||||||||||||| ||||||| |||| | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 164097 ATCGGTATCTA-TGCATACATGGGT 164120 | ||| | || ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 174 bits (192), Expect = 2e-38 Identities = 163/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 163917 GATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGT 163976 |||||||| |||||||| ||| ||||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 163977 GCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCA 164036 || || | || | || || ||||| ||||||||||||||||| ||||||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 164037 TCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTG 164096 || || || || ||| | |||||||||||||||| ||||||| |||| | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 164097 ATCGGTATCTA-TGCATACATGGGT 164120 | ||| | || ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 164121 CGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCT 164180 |||||||||||| | |||| |||| | ||||||||||| ||||| ||| |||||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 164181 GCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTC 164240 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 164241 TCTGACGCAATGCC 164254 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 164121 CGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCT 164180 |||||||||||| | |||| |||| | ||||||||||| ||||| ||| |||||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 164181 GCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTC 164240 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 164241 TCTGACGCAATGCC 164254 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556913953889520