Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1558 187 3e-42 >seq1558 Length=203828 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027 || ||||| || |||||||||||| |||||||||||||||| |||||||| |||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 169028 CCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCAT 169087 || ||||| ||| ||| || || ||| | |||||||| || ||||||| || ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 169088 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTAT 169147 ||||| | || || || ||| ||||| | || || ||||| | ||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACAT 169198 |||||| |||||||||||||||||||| || || ||||| || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027 || ||||| || |||||||||||| |||||||||||||||| |||||||| |||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 169028 CCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCAT 169087 || ||||| ||| ||| || || ||| | |||||||| || ||||||| || ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 169088 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTAT 169147 ||||| | || || || ||| ||||| | || || ||||| | ||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACAT 169198 |||||| |||||||||||||||||||| || || ||||| || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 163 bits (180), Expect = 3e-35 Identities = 209/285 (73%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 169197 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTC 169256 |||| ||||| ||| | |||||||||| || || |||||||||||| | | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 169257 ACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTA 169316 |||||||| |||| | | || || | || | ||||| || || | ||| | | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 169317 CAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTA 169376 | |||||||||||||| ||||| || ||||| ||||||||||| ||||| | || | Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---A 48905 Query 169377 AGATCAT-TCCT----ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 || || | | || || |||| ||| | | ||| | || ||| | ||||||||||| Sbjct 48904 AGGTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 48845 Query 169432 AATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATC 169476 |||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 48844 AATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 48800 Score = 163 bits (180), Expect = 3e-35 Identities = 209/285 (73%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 169197 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTC 169256 |||| ||||| ||| | |||||||||| || || |||||||||||| | | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 169257 ACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTA 169316 |||||||| |||| | | || || | || | ||||| || || | ||| | | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 169317 CAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTA 169376 | |||||||||||||| ||||| || ||||| ||||||||||| ||||| | || | Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---A 145298 Query 169377 AGATCAT-TCCT----ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 || || | | || || |||| ||| | | ||| | || ||| | ||||||||||| Sbjct 145299 AGGTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 145358 Query 169432 AATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATC 169476 |||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 145359 AATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 145403 Score = 150 bits (166), Expect = 2e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 168623 GACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGT 168682 || || ||| | ||||| || ||||| |||| | || || ||||||||||| ||||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 168683 GCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCT 168742 || || | ||| |||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 168743 ACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTA 168802 | | || ||||||||||| || |||||||||||||| | | | | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 168803 ATCGGAATCT-CTGCCTACATGGGT 168826 | || | | ||| |||||||||| Sbjct 53804 CTAGGTGTATACTG-CTACATGGGT 53781 Score = 150 bits (166), Expect = 2e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 168623 GACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGT 168682 || || ||| | ||||| || ||||| |||| | || || ||||||||||| ||||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 168683 GCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCT 168742 || || | ||| |||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 168743 ACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTA 168802 | | || ||||||||||| || |||||||||||||| | | | | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 168803 ATCGGAATCT-CTGCCTACATGGGT 168826 | || | | ||| |||||||||| Sbjct 140399 CTAGGTGTATACTG-CTACATGGGT 140422 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 ||||||||||||| | | | |||||||| | || |||||| ||| ||||| ||||| | Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 ||||| ||||||| | || |||||| | || ||||| | || || ||||| ||||||| Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 168951 ATGGTATGCCTCTAGG 168966 | ||||||||| |||| Sbjct 52244 ACGGTATGCCTTTAGG 52229 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 ||||||||||||| | | | |||||||| | || |||||| ||| ||||| ||||| | Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 ||||| ||||||| | || |||||| | || ||||| | || || ||||| ||||||| Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 168951 ATGGTATGCCTCTAGG 168966 | ||||||||| |||| Sbjct 141959 ACGGTATGCCTTTAGG 141974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564430607499840