Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1558 522 3e-143 >seq1558 Length=203828 Score = 522 bits (578), Expect = 3e-143 Identities = 722/1009 (72%), Gaps = 21/1009 (2%) Strand=Plus/Minus Query 172980 AGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTC 173039 ||| |||||||||||| | || ||||| ||| | ||||| | |||||||||||| || | Sbjct 175561 AGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTCCCTTGTGCTTACTTTGC 175502 Query 173040 TATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGC 173099 | ||||||||||| || ||||| |||||||| ||||||||||| |||||| | || Sbjct 175501 ATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGGTATACGCATGGTTTAGC 175442 Query 173100 ATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGC 173159 |||| || | ||||| ||||| ||||||||||| || || ||||||| || Sbjct 175441 TACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCTACACCTGCTAACAG 175382 Query 173160 AATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTG 173219 |||| ||| |||||| || ||||||| || ||||| |||||| ||| ||||| Sbjct 175381 TATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAAGGTGATTTCACTCGTTG 175322 Query 173220 GTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG 173279 || ||||| || || ||||| || || || ||||| || | ||||| | || || Sbjct 175321 GTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGTGCATTTGGTTTAATTGG 175262 Query 173280 TTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACT 173339 ||||||||| ||||||||||| || || | ||| | | | || ||||||||| | Sbjct 175261 TTTCATGCTTCGTCAGTTTGAAATTGCTCGTTCAGTAAACTTACGTCCATACAACGCAAT 175202 Query 173340 CGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCA 173399 || ||||| || || || || ||| | | || |||| |||||| |||| || Sbjct 175201 TGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCA 175142 Query 173400 GCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATT 173459 |||||||||| |||||| |||||||| || || ||||| |||| || ||||| Sbjct 175141 ATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATT 175082 Query 173460 CATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAAT 173519 | | ||||||||||||||| ||| | || ||||| ||||||||||||||||| || | Sbjct 175081 CTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATGATGGGTGTTGCTGGTGT 175022 Query 173520 ACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGA 173579 |||||| || ||| ||||||| ||||| ||||| || || | |||||||| | || Sbjct 175021 TTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTCGA 174962 Query 173580 AGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCC 173639 |||| ||| ||| | | || |||| ||| | ||||| | || Sbjct 174961 AGAC------------GGTGACGGT--GCT--AA--CACA---TTCCGTGCATTCAACCC 174923 Query 173640 TACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATT 173699 |||||||| |||||||| || |||| |||| || ||| | ||||||||||| || || Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 173700 TGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCAT 173759 ||| | || || || |||||| | | | |||||| ||||||| || || || || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 173760 GGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGA 173819 ||| | |||| | || ||| | |||||| | || || ||| | | || ||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 173820 CTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAA 173879 ||| ||||| |||||||| | || || ||||| || || ||||| || ||||||||||| Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 173880 GAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGA 173939 || || |||||||| |||||||| | || |||||| | || ||| |||||||| || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 173940 GAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || ||||| || |||||||| |||||| | |||||||| || ||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAA 174574 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 172297 ATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCAT 172356 ||||| ||||| |||||||| ||| |||| ||||||||||| || ||||| || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 172357 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCAC 172416 || ||||||||| ||| || || || | || || || || ||||||||||| |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 172417 GGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTAC 172476 |||||||||||||| || ||| ||||| | || ||||||||| |||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 172477 GGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 172526 || ||| ||||| |||||||||||||| |||||||| ||||| || || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 172297 ATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCAT 172356 ||||| ||||| |||||||| ||| |||| ||||||||||| || ||||| || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 172357 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCAC 172416 || ||||||||| ||| || || || | || || || || ||||||||||| |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 172417 GGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTAC 172476 |||||||||||||| || ||| ||||| | || ||||||||| |||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 172477 GGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACA 172526 || ||| ||||| |||||||||||||| |||||||| ||||| || || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 178 bits (196), Expect = 2e-39 Identities = 211/283 (75%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 172528 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCAC 172587 ||||||||||||||||| |||||||| || ||||||||||||||||| | | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAG 172707 |||||||||||| | |||||||||||||||||||||||||| ||||| || || ||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---AAG 48903 Query 172708 ATTGT-TCCT----ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTA 172762 | || | || || |||| ||| | | ||| | || ||| ||||||||||||| | Sbjct 48902 GTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 48843 Query 172763 TGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTC 172805 |||| || | || || ||||||||||| ||||| | ||||| Sbjct 48842 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 48800 Score = 178 bits (196), Expect = 2e-39 Identities = 211/283 (75%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 172528 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCAC 172587 ||||||||||||||||| |||||||| || ||||||||||||||||| | | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 |||||| |||| | || || || | || | ||||| || || | ||| | | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAG 172707 |||||||||||| | |||||||||||||||||||||||||| ||||| || || ||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGA--CTCAC---AAG 145300 Query 172708 ATTGT-TCCT----ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTA 172762 | || | || || |||| ||| | | ||| | || ||| ||||||||||||| | Sbjct 145301 GTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAA 145360 Query 172763 TGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTC 172805 |||| || | || || ||||||||||| ||||| | ||||| Sbjct 145361 TGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 145403 Score = 134 bits (148), Expect = 2e-26 Identities = 156/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 171952 GACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGG 172010 || || ||| | ||||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 53926 Query 172011 TGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGC 172070 ||| || | ||| | || |||||||| ||||| ||||||||||| || |||||||| || Sbjct 53925 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 53866 Query 172071 AACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 172130 | |||| || ||||| ||||| ||||||||||| || | | | | |||||||| Sbjct 53865 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Query 172131 TATCGGTATCT-CAGCATACATGGG 172154 | | ||| | | | || |||||||| Sbjct 53805 TCTAGGTGTATACTGC-TACATGGG 53782 Score = 134 bits (148), Expect = 2e-26 Identities = 156/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 171952 GACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGG 172010 || || ||| | ||||||||| | |||||| ||||| || |||||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTT-TACGGTAACAACATCATTACAGG 140277 Query 172011 TGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGC 172070 ||| || | ||| | || |||||||| ||||| ||||||||||| || |||||||| || Sbjct 140278 TGCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGC 140337 Query 172071 AACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 172130 | |||| || ||||| ||||| ||||||||||| || | | | | |||||||| Sbjct 140338 TTCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Query 172131 TATCGGTATCT-CAGCATACATGGG 172154 | | ||| | | | || |||||||| Sbjct 140398 TCTAGGTGTATACTGC-TACATGGG 140421 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 172160 AGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCAC 172219 |||||||| |||| | | | ||||||||| | |||||||| |||||| || ||||| | Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 172220 CTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 172279 | ||| | ||||| | ||||| ||| | || || || |||| || ||||||||||||| Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 172280 ATGGTATGCCACTAGGT 172296 | |||||||| ||||| Sbjct 52244 ACGGTATGCCTTTAGGT 52228 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 172160 AGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCAC 172219 |||||||| |||| | | | ||||||||| | |||||||| |||||| || ||||| | Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 172220 CTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 172279 | ||| | ||||| | ||||| ||| | || || || |||| || ||||||||||||| Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 172280 ATGGTATGCCACTAGGT 172296 | |||||||| ||||| Sbjct 141959 ACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588039747702880