Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1558 601 4e-167 >seq1558 Length=203828 Score = 601 bits (666), Expect = 4e-167 Identities = 751/1024 (73%), Gaps = 4/1024 (0%) Strand=Plus/Minus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCT 163677 ||||| |||| | |||||||||||| | || ||||||||||| | |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 163678 GGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACT 163737 || ||| |||| | || |||||| | ||| | ||||| ||| | |||||||| ||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 163738 TTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTT 163797 |||||||| || ||||| || ||||| | || ||||| || | || ||| ||| || Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 163798 CTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGG 163857 | ||||| ||||| || || |||||| || ||||| ||| |||||||| || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 163858 GGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTT 163917 ||||| || ||||| || |||||| || ||| |||||||| || | ||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 163918 GTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCT 163977 || || | ||||| || |||| | | ||||||||||||||||| || |||||| ||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 163978 CGCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTT 164036 || | | | | | | | || ||||| || ||||||||||| | || |||||||| || Sbjct 175233 CGT-TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 164037 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTT 164096 |||| || || || || ||||| | ||||||||| |||||||||| || || ||| Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 164097 TGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTT 164156 || || || || |||||| | ||| | |||||| | ||||| || || |||||||| | Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 164157 GAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTAT 164216 ||||| ||||| |||||||| ||||||||| | |||| | || || ||| |||||| Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 164217 TCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAA 164276 |||||| | || |||||||| ||||| | ||||| || || || ||||| || Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 164277 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 164336 || || | | ||||||| ||||| || || |||||||| ||||| ||||| ||||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 164337 GTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 164396 ||| || |||||||||||||| || |||||||| || |||||||| || |||||||| || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 164397 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 164456 || || || | ||||| |||| ||||||| || | || | ||||| || | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 164457 TCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 164516 ||||||||||| || ||| ||||||||| | || || ||||| ||||| ||||| || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 164517 TTTCTATACCAAGAACA-TCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTG 164575 ||||| || || |||| |||| || |||||||| | ||||| ||| | || | | Sbjct 174694 ATTCTACACTAAAAACATTCTTCTT-AACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 174636 Query 164576 ACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| ||| ||||| || || ||||| ||||||||| | || | ||||| || || | Sbjct 174635 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTAT 174576 Query 164636 AATA 164639 |||| Sbjct 174575 AATA 174572 Score = 239 bits (264), Expect = 5e-58 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 163091 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGC 163150 |||||||||| |||||| | ||||||||||| || || ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 163151 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 163210 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 163211 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 163270 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 163271 GTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 163330 |||| | ||||| ||||||||| | | |||||||| || ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 163331 ACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||||| || |||||||||||||| || ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 48808 Score = 239 bits (264), Expect = 5e-58 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 163091 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGC 163150 |||||||||| |||||| | ||||||||||| || || ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 163151 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 163210 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 163211 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 163270 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 163271 GTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 163330 |||| | ||||| ||||||||| | | |||||||| || ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 163331 ACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||||| || |||||||||||||| || ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 145395 Score = 201 bits (222), Expect = 1e-46 Identities = 180/226 (80%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 |||||| ||||||| |||| | || ||||||||||| |||||||| || ||||| || || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 ||||||||| ||||| || ||||| |||||||||||| | ||| || ||||||||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 162987 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 163046 ||| ||||| || || | ||||||| || ||||||| || ||| ||| | ||||| Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 50944 Query 163047 CAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092 | ||||||||||||||||| || |||||||| || || || ||| Sbjct 50943 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 201 bits (222), Expect = 1e-46 Identities = 180/226 (80%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 |||||| ||||||| |||| | || ||||||||||| |||||||| || ||||| || || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 ||||||||| ||||| || ||||| |||||||||||| | ||| || ||||||||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 162987 TTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTA 163046 ||| ||||| || || | ||||||| || ||||||| || ||| ||| | ||||| Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 143259 Query 163047 CAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCAT 163092 | ||||||||||||||||| || |||||||| || || || ||| Sbjct 143260 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 162517 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 162576 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 162577 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 162636 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 162637 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTG 162696 || || || |||||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 162697 ATCGGCATCTATGCCTACATGGG 162719 | || | || ||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGG 53782 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 162517 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 162576 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 162577 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 162636 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 162637 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTG 162696 || || || |||||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 162697 ATCGGCATCTATGCCTACATGGG 162719 | || | || ||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGG 140421 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 162721 CGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCT 162780 ||||| |||||| | |||| |||| | |||||||||||||||||| ||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 162781 GCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 162840 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 162841 TCTGACGCAATGCCCTTGGGT 162861 ||||||| ||||| || ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 162721 CGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCT 162780 ||||| |||||| | |||| |||| | |||||||||||||||||| ||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 162781 GCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 162840 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 162841 TCTGACGCAATGCCCTTGGGT 162861 ||||||| ||||| || ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 162503 CCCCTGTGGACATC 162516 | || || |||||| Sbjct 55247 CGCCAGTAGACATC 55234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 162503 CCCCTGTGGACATC 162516 | || || |||||| Sbjct 138956 CGCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557573141051600