Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1558 583 1e-161 >seq1558 Length=203828 Score = 583 bits (646), Expect = 1e-161 Identities = 745/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 183178 TGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCT 183237 |||||||||| | |||||||||| || | || || || || || || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 183238 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 183297 || | |||| | || |||||| |||| | || |||||| | ||||| || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 183298 TTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 183357 || ||||| |||||||| ||||| | ||| |||| || | |||||| |||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 183358 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGG 183417 | || |||||||| || || |||||| || ||||| ||| |||||||| || ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 183418 GGTCCTGAGTCTCAAGGGGACTTTCAA-CGCTGGTGCCAACTTGGGGGACTCTGGAATTT 183476 ||||| || ||||||| || ||||| || ||||| |||||||| || | ||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGA-TTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATT 175295 Query 183477 TGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 183536 || || | |||||||| |||| | | ||||||||||||||||| ||||||||| |||| Sbjct 175294 CGTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 175235 Query 183537 TCGCTTGATTGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 183592 ||| || | ||| | ||||| ||||| || ||||| ||||| | || ||||||| Sbjct 175234 TCG-TTCA---GTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTG 175179 Query 183593 TTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTA 183652 | || || |||||||| || || ||| | ||||| || |||||||||||||||| Sbjct 175178 TATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTA 175119 Query 183653 GTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGA 183712 ||||||| ||||| || ||||| | ||| | || ||| | || |||||||||||||||| Sbjct 175118 GTTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGA 175059 Query 183713 CGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTG 183772 | | ||||| ||||| |||||||| ||||||||| | |||| | || || | ||| Sbjct 175058 CACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 174999 Query 183773 CTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT 183832 |||| || |||| || || || || ||||| | ||||| || || || ||||||| Sbjct 174998 CTATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACAT 174939 Query 183833 TCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTT 183892 || ||||| | | || || | ||||| || || ||||||||||| || || |||| Sbjct 174938 TCCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTT 174879 Query 183893 TCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGT 183952 ||||||||||||||||||| ||||| || || || |||||| | |||||||| |||| Sbjct 174878 TCTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGT 174819 Query 183953 TGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTA 184012 | || ||||| || | ||||||||| | | ||||||| | | || | ||||| | Sbjct 174818 TATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAA 174759 Query 184013 ATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTG 184072 | | |||||||| || || ||| |||||||| | || || ||||| || ||||| | Sbjct 174758 ACTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCG 174699 Query 184073 AGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTT 184132 | || |||||||| || ||||| |||||||| ||||| | ||||| ||| | || || Sbjct 174698 AAACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTC 174639 Query 184133 CTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTC 184192 || |||||||| || ||| |||| || || || |||||||| | || || |||| Sbjct 174638 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTC 174579 Query 184193 T 184193 | Sbjct 174578 T 174578 Score = 241 bits (266), Expect = 2e-58 Identities = 216/271 (80%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 182500 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGC 182559 |||| ||||| |||||| | |||||||||||||| || ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 182560 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCA 182619 |||||||| | ||||| ||||| || | || || |||||||| || | ||| | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 182679 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739 |||| || |||||||||||||| | | ||||||||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGA 182770 | ||||||||||| ||||||||||| ||||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 241 bits (266), Expect = 2e-58 Identities = 216/271 (80%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 182500 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGC 182559 |||| ||||| |||||| | |||||||||||||| || ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 182560 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCA 182619 |||||||| | ||||| ||||| || | || || |||||||| || | ||| | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 182679 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739 |||| || |||||||||||||| | | ||||||||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGA 182770 | ||||||||||| ||||||||||| ||||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 182271 ATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCAT 182330 ||||| || || ||||||| ||| | || |||||||| || |||||||| |||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 182331 CCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCAC 182390 || ||||||||||| ||||| || |||||||||||||||||| | || || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 182391 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTAT 182450 |||||||| ||||| || || | ||||||| || ||||| | || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCAT 182501 |||||| ||||||||||||||||| || || ||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 182271 ATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCAT 182330 ||||| || || ||||||| ||| | || |||||||| || |||||||| |||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 182331 CCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCAC 182390 || ||||||||||| ||||| || |||||||||||||||||| | || || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 182391 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTAT 182450 |||||||| ||||| || || | ||||||| || ||||| | || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCAT 182501 |||||| ||||||||||||||||| || || ||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 181926 GACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 181985 || |||||||| ||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 181986 GCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCC 182045 ||||| ||||| | || |||||||| |||||||||||||||||||| ||||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 182046 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTG 182105 || || || |||||| | || ||||||||||||| |||||| | |||| |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 182106 ATCGGCATCTACGCCTACATGGG 182128 | || | ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGG 53782 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 181926 GACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 181985 || |||||||| ||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 181986 GCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCC 182045 ||||| ||||| | || |||||||| |||||||||||||||||||| ||||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 182046 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTG 182105 || || || |||||| | || ||||||||||||| |||||| | |||| |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 182106 ATCGGCATCTACGCCTACATGGG 182128 | || | ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGG 140421 Score = 147 bits (162), Expect = 3e-30 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 182130 CGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCT 182189 |||||||||||| | |||| ||| |||||||||||||| |||||| |||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 182190 GCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTC 182249 |||||||| |||||||| || |||||||||||||| || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 182250 TCCGATGCAATGCC 182263 || || | ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 147 bits (162), Expect = 3e-30 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 182130 CGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCT 182189 |||||||||||| | |||| ||| |||||||||||||| |||||| |||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 182190 GCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTC 182249 |||||||| |||||||| || |||||||||||||| || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 182250 TCCGATGCAATGCC 182263 || || | ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611684087220400