Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1558 594 6e-165 >seq1558 Length=203828 Score = 594 bits (658), Expect = 6e-165 Identities = 746/1021 (73%), Gaps = 2/1021 (0%) Strand=Plus/Minus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 |||||||||| | ||| ||||||||| | ||| |||||||| || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 166218 GGACTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTAC 166276 || || || | ||||| |||||| |||| | || |||||| | ||||| ||||| Sbjct 175533 GGT-TTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTAC 175475 Query 166277 TTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTT 166336 |||||| || |||||||| ||||| | || | ||| | || ||| ||||| Sbjct 175474 TTTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 175415 Query 166337 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTG 166396 | || || || |||||||| || || | ||||| ||| ||||| || || | || Sbjct 175414 CTTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTG 175355 Query 166397 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTT 166456 |||||| || |||||||| |||||| | ||||| |||||||| || | ||||| || Sbjct 175354 GGGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATT 175295 Query 166457 TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGC 166516 |||||| | |||||||| |||| ||||||||||||||||||| ||||||||||| || Sbjct 175294 CGTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 175235 Query 166517 TCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTT 166576 |||| |||| | ||||| ||||| ||||| ||||| || | || |||||||| || Sbjct 175234 TCGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 166577 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 166636 |||| || || || || ||||| | |||||||| ||||||| || || || ||| Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 166637 CGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACT 166696 ||| || | || |||||||| ||| | | ||| | ||||| ||||||||||||||||| Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 166697 GAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCAT 166756 |||||||| || ||||||||||| || ||| || | |||| ||| || | | ||| || Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 166757 CCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAA 166816 || |||| ||| || || ||||| | | |||| ||||| || || || ||| Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 166817 GGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTG 166876 |||||| || |||| || | |||||||| || || |||||||| || ||||| | || Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 166877 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 166936 ||| || ||||||||| |||| || ||| || | ||| | || ||||| ||| | || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 166937 TGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166996 ||||| || | ||||| |||| ||| | || ||| || | ||| | ||||| ||| | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 166997 TCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056 |||||||| ||||| || || ||||| | | || || || || ||||| || ||||| Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116 ||||| || || |||||||| | || || ||||| ||| |||||||||| || || Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTA 167176 ||||| || || |||| |||||||||||||| || | || | ||||||||||| || Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATA 174575 Query 167177 A 167177 | Sbjct 174574 A 174574 Score = 205 bits (226), Expect = 1e-47 Identities = 218/282 (77%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| |||||||| || ||||||||||| || |||||||| || ||||| | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 165591 |||||| | || || ||||| ||| | ||||| |||||||||||| | ||| ||| || | Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 48959 Query 165592 -ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAA 165650 |||||||||||| | |||||||||||||||||||| || | || | | || |||| Sbjct 48958 TATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGT--AGACTC---ACAA 48904 Query 165651 AATCAT-CCCT----ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTT 165705 || | || |||||||| ||| | | ||||||||| | ||||||||||| Sbjct 48903 GGTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTA 48844 Query 165706 ATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 ||||| ||||||||||||||||||||||| || ||| | ||| Sbjct 48843 ATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 205 bits (226), Expect = 1e-47 Identities = 218/282 (77%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| |||||||| || ||||||||||| || |||||||| || ||||| | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC-AC 165590 |||||| | || || ||||| ||| | ||||| |||||||||||| | ||| ||| | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 145244 Query 165591 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAA 165650 |||||||||||| | |||||||||||||||||||| || | || | | || |||| Sbjct 145245 TATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGT--AGACTC---ACAA 145299 Query 165651 AATCAT-CCCT----ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTT 165705 || | || |||||||| ||| | | ||||||||| | ||||||||||| Sbjct 145300 GGTCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTA 145359 Query 165706 ATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCT 165747 ||||| ||||||||||||||||||||||| || ||| | ||| Sbjct 145360 ATGCACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 188 bits (208), Expect = 8e-43 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 164896 GATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGT 164955 |||||||| |||||||| || |||||||||| | ||||||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 164956 GCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCA 165015 ||||| | || |||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 165016 ACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTC 165075 | | || || ||||| |||||||||||||||||||| | | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 165076 ATCGGTGTAGCTTGCTACATGGGT 165099 | |||||| |||||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 188 bits (208), Expect = 8e-43 Identities = 164/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 164896 GATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGT 164955 |||||||| |||||||| || |||||||||| | ||||||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 164956 GCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCA 165015 ||||| | || |||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 165016 ACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTC 165075 | | || || ||||| |||||||||||||||||||| | | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 165076 ATCGGTGTAGCTTGCTACATGGGT 165099 | |||||| |||||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 179 bits (198), Expect = 4e-40 Identities = 180/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 165241 ATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCAT 165300 |||||||||||||| |||| ||| |||| |||||||||||||| ||||| |||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 165301 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 || ||||||||| | || |||||||| ||||||||||| || | ||||| |||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 165361 GGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACT 165418 || | | |||||||| || | |||| || ||||||||| | || |||| ||| Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAA--AACGAATCAGCTAACG 50951 Query 165419 ACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCA 165470 | ||||| || || ||||||||||| || || ||||| || ||||| || Sbjct 50950 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 179 bits (198), Expect = 4e-40 Identities = 180/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 165241 ATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCAT 165300 |||||||||||||| |||| ||| |||| |||||||||||||| ||||| |||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 165301 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 || ||||||||| | || |||||||| ||||||||||| || | ||||| |||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 165361 GGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACT 165418 || | | |||||||| || | |||| || ||||||||| | || |||| ||| Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAA--AACGAATCAGCTAACG 143252 Query 165419 ACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCA 165470 | ||||| || || ||||||||||| || || ||||| || ||||| || Sbjct 143253 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 165100 CGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGC 165159 |||||||||||| | |||| ||| | ||||||||||| ||||| ||||| || Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 165160 GCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTC 165219 || || || ||||| ||| | || || ||| | || || ||| |||| ||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 165220 TCTGATGGTATGCCTCTTGGT 165240 ||||| ||||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 165100 CGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGC 165159 |||||||||||| | |||| ||| | ||||||||||| ||||| ||||| || Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 165160 GCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTC 165219 || || || ||||| ||| | || || ||| | || || ||| |||| ||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 165220 TCTGATGGTATGCCTCTTGGT 165240 ||||| ||||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTC 164881 |||||||| ||| | || | || ||| | || || || | || ||||||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAACA-TCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 164882 CCCCTGTGGACAT 164894 | || || ||||| Sbjct 55247 CGCCAGTAGACAT 55235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTC 164881 |||||||| ||| | || | || || || || || || | || ||||||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 164882 CCCCTGTGGACAT 164894 | || || ||||| Sbjct 138956 CGCCAGTAGACAT 138968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563649822705920