Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1558 214 2e-50 >seq1558 Length=203828 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||||| ||||| || ||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 |||||||| ||| ||| ||||||||| | ||||| || || | |||||||| |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 ||||| | || || || ||| ||||| | || ||||| || ||||| ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || ||| ||||| |||||||||||||| ||||||||||| || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||||| ||||| || ||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 |||||||| ||| ||| ||||||||| | ||||| || || | |||||||| |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 ||||| | || || || ||| ||||| | || ||||| || ||||| ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || ||| ||||| |||||||||||||| ||||||||||| || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 169822 GATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGT 169881 ||||| ||| | ||||| || ||||||| | | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 169882 GCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCA 169941 || || | ||| |||| |||||||||||||| |||||||| || ||||||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 169942 ACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTT 170001 ||||||| |||||||| || |||||||||||||| ||| | | | | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 170002 ATCGGAATCT-CTGCCTACATGGGT 170025 | || | | ||| |||||||||| Sbjct 53804 CTAGGTGTATACTG-CTACATGGGT 53781 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 169822 GATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGT 169881 ||||| ||| | ||||| || ||||||| | | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 169882 GCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCA 169941 || || | ||| |||| |||||||||||||| |||||||| || ||||||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 169942 ACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTT 170001 ||||||| |||||||| || |||||||||||||| ||| | | | | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 170002 ATCGGAATCT-CTGCCTACATGGGT 170025 | || | | ||| |||||||||| Sbjct 140399 CTAGGTGTATACTG-CTACATGGGT 140422 Score = 152 bits (168), Expect = 6e-32 Identities = 200/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTC 170455 |||| ||||||||| | || ||||||||||| ||| || ||||| |||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 170456 ACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCA 170515 |||||||| | ||| | | || ||| | | || ||||| ||| | | ||| | | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 170516 CAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTA 170575 | |||||||| ||| | || || || ||||||||||| ||| | ||||| | ||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 170576 AAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGC 170635 ||| | || ||||||||| | | ||| | || ||| |||||||||||||||||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 170636 ATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 | |||||||| || ||||||||||| || ||||| || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGC 48803 Score = 152 bits (168), Expect = 6e-32 Identities = 200/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTC 170455 |||| ||||||||| | || ||||||||||| ||| || ||||| |||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 170456 ACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCA 170515 |||||||| | ||| | | || ||| | | || ||||| ||| | | ||| | | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 170516 CAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTA 170575 | |||||||| ||| | || || || ||||||||||| ||| | ||||| | ||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 170576 AAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGC 170635 ||| | || ||||||||| | | ||| | || ||| |||||||||||||||||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 170636 ATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 | |||||||| || ||||||||||| || ||||| || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGC 145400 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||| |||| | |||||||||||||||||| |||||| |||||| || || |||| Sbjct 52364 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 52305 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 |||| | ||||| | |||||||||||||| || ||| |||| || || || ||||| | Sbjct 52304 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 52245 Query 170150 ACGGAATGCCTCTAGGT 170166 |||| |||||| ||||| Sbjct 52244 ACGGTATGCCTTTAGGT 52228 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||| |||| | |||||||||||||||||| |||||| |||||| || || |||| Sbjct 141839 AGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCAGCTC 141898 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 |||| | ||||| | |||||||||||||| || ||| |||| || || || ||||| | Sbjct 141899 CAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTCTCTG 141958 Query 170150 ACGGAATGCCTCTAGGT 170166 |||| |||||| ||||| Sbjct 141959 ACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582836649035200