Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1558 208 9e-49 >seq1558 Length=203828 Score = 208 bits (230), Expect = 9e-49 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 84249 TGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGT 84308 |||||||| ||||| || |||||||| |||||||||||||| |||||| | ||| | Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 84309 GAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCA 84368 || | ||||| || ||||| ||||||| ||| ||||| || | ||||| ||||| || Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 84369 GAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGG 84428 ||||||| | |||||||||||||||||||| || |||||||| || || ||||||||| Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGAT 84478 ||||| ||||| || ||||| || | |||| ||||||| || || ||||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 208 bits (230), Expect = 9e-49 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 84249 TGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGT 84308 |||||||| ||||| || |||||||| |||||||||||||| |||||| | ||| | Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 84309 GAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCA 84368 || | ||||| || ||||| ||||||| ||| ||||| || | ||||| ||||| || Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 84369 GAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGG 84428 ||||||| | |||||||||||||||||||| || |||||||| || || ||||||||| Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGAT 84478 ||||| ||||| || ||||| || | |||| ||||||| || || ||||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 84620 ACCCATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCAC 84678 ||||||||| ||| || |||| | ||||||||| | || | |||||| ||||| |||| Sbjct 53781 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 53839 Query 84679 CATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAA 84738 | || |||| ||| ||||| | | || ||||||||||| || ||||| || ||||| | Sbjct 53840 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 53899 Query 84739 TAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAAC 84798 | || ||||| | ||| | ||| ||||| | |||||||||||| ||||| | ||||||| Sbjct 53900 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 53959 Query 84799 CAGCGACTGGCTCACGGATACCGTC 84823 | | ||||| ||||||||||| || Sbjct 53960 CTGAAACTGGTTCACGGATACCATC 53984 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 84620 ACCCATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCAC 84678 ||||||||| ||| || |||| | ||||||||| | || | |||||| ||||| |||| Sbjct 140422 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 140364 Query 84679 CATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAA 84738 | || |||| ||| ||||| | | || ||||||||||| || ||||| || ||||| | Sbjct 140363 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 140304 Query 84739 TAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAAC 84798 | || ||||| | ||| | ||| ||||| | |||||||||||| ||||| | ||||||| Sbjct 140303 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 140244 Query 84799 CAGCGACTGGCTCACGGATACCGTC 84823 | | ||||| ||||||||||| || Sbjct 140243 CTGAAACTGGTTCACGGATACCATC 140219 Score = 149 bits (164), Expect = 7e-31 Identities = 193/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || |||||||| |||||||| ||||||||||| | ||||| || | Sbjct 48815 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 48874 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | ||||| ||| || || | || |||||||| Sbjct 48875 ATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGATTGGTTGAAGTTG 48934 Query 84105 AATCCATTCAGATTAAATGCCATGGT-GCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || || || | || |||||||| || | ||| ||| | ||||| |||||||| || | Sbjct 48935 AAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAATACCGAT 48993 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| ||||| ||||| | |||||| |||||||| ||||| || || Sbjct 48994 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 49053 Query 84224 GAAGATAAGACGACCGAAGTAGCC 84247 |||||| |||||||| ||||| || Sbjct 49054 GAAGATTAGACGACCAAAGTAACC 49077 Score = 149 bits (164), Expect = 7e-31 Identities = 193/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || |||||||| |||||||| ||||||||||| | ||||| || | Sbjct 145388 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 145329 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | ||||| ||| || || | || |||||||| Sbjct 145328 ATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGATTGGTTGAAGTTG 145269 Query 84105 AATCCATTCAGATTAAATGCCATGGT-GCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || || || | || |||||||| || | ||| ||| | ||||| |||||||| || | Sbjct 145268 AAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAATACCGAT 145210 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| ||||| ||||| | |||||| |||||||| ||||| || || Sbjct 145209 TACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTG 145150 Query 84224 GAAGATAAGACGACCGAAGTAGCC 84247 |||||| |||||||| ||||| || Sbjct 145149 GAAGATTAGACGACCAAAGTAACC 145126 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 84486 GGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCC 84545 ||||| || |||||||| |||||||| |||| ||| || || | ||||||||| || || Sbjct 52235 GGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGCT 52294 Query 84546 GCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAA 84605 || || |||||||| |||||||| ||| |||||||||||||||||| | ||| | || Sbjct 52295 GCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGAT 52354 Query 84606 AGTTCCCATTCACG 84619 | |||||| ||||| Sbjct 52355 AATTCCCACTCACG 52368 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 84486 GGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCC 84545 ||||| || |||||||| |||||||| |||| ||| || || | ||||||||| || || Sbjct 141968 GGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGCT 141909 Query 84546 GCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAA 84605 || || |||||||| |||||||| ||| |||||||||||||||||| | ||| | || Sbjct 141908 GCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGAT 141849 Query 84606 AGTTCCCATTCACG 84619 | |||||| ||||| Sbjct 141848 AATTCCCACTCACG 141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571262474446640