Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1558 149 2e-31 >seq1558 Length=203828 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||| ||| ||||||||||||||||||| || || || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 |||||||| ||| ||||||||||| || |||||||| | | ||| | ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||| |||||||| || | || ||||| || || | | ||| || | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 || || || || ||||| ||||| || || || ||||| ||||| || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||| ||| ||||||||||||||||||| || || || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 |||||||| ||| ||||||||||| || |||||||| | | ||| | ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||| |||||||| || | || ||||| || || | | ||| || | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 || || || || ||||| ||||| || || || ||||| ||||| || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 134 bits (148), Expect = 4e-27 Identities = 199/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 26510 GGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCAT 26569 || |||||||| | |||| || || || || ||| || ||| ||||| | || Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 26570 TTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACA 26629 ||||| | ||| |||||||||| | || || ||| | || || | ||| | | || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAG 26689 |||||||| ||| |||| ||||| ||||| ||||| ||||||||||| | || Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 || || || ||||| || | | ||||| |||||| | || | ||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCATCT 26791 |||||||| ||||| ||||| || || |||||||| ||| || Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACT 48796 Score = 134 bits (148), Expect = 4e-27 Identities = 199/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 26510 GGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCAT 26569 || |||||||| | |||| || || || || ||| || ||| ||||| | || Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 26570 TTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACA 26629 ||||| | ||| |||||||||| | || || ||| | || || | ||| | | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAG 26689 |||||||| ||| |||| ||||| ||||| ||||| ||||||||||| | || Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 || || || ||||| || | | ||||| |||||| | || | ||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCATCT 26791 |||||||| ||||| ||||| || || |||||||| ||| || Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACT 145407 Score = 120 bits (132), Expect = 9e-23 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 25934 GATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGA 25993 ||||| || ||||| |||||||| || || | | ||||| ||||| || || |||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 25994 GCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGC 26053 || || |||| | |||||||||||||| || || || ||||| || |||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 26054 ACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113 | || ||||||||| ||||||| || || || || ||||| || | | |||||| | Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 26114 ATAGGAGTA 26122 |||| ||| Sbjct 53804 CTAGGTGTA 53796 Score = 120 bits (132), Expect = 9e-23 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 25934 GATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGA 25993 ||||| || ||||| |||||||| || || | | ||||| ||||| || || |||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 25994 GCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGC 26053 || || |||| | |||||||||||||| || || || ||||| || |||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 26054 ACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113 | || ||||||||| ||||||| || || || || ||||| || | | |||||| | Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 26114 ATAGGAGTA 26122 |||| ||| Sbjct 140399 CTAGGTGTA 140407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146723685378192