Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1558 168 2e-37 >seq1558 Length=203828 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 36248 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 36307 |||||| || |||||||| || || ||||||||||| ||||| || || | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 36308 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 36367 ||||| ||||||||||||| || | || |||||||| | | ||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 36368 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 36427 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 36428 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAAT 36478 ||| ||||||||||| || || || | ||| || |||||||| || || || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 36248 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 36307 |||||| || |||||||| || || ||||||||||| ||||| || || | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 36308 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 36367 ||||| ||||||||||||| || | || |||||||| | | ||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 36368 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 36427 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 36428 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAAT 36478 ||| ||||||||||| || || || | ||| || |||||||| || || || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 158 bits (174), Expect = 4e-34 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 48803 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 48862 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||| |||||||| | || | || | || || || ||||| Sbjct 48863 GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGAT 48922 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || |||||||| || | || | ||| || | | Sbjct 48923 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 48982 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||||||||| | |||||| ||||| || || || || Sbjct 48983 CAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 49042 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 36249 ||| || |||||||| || | |||||||| |||| Sbjct 49043 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 158 bits (174), Expect = 4e-34 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 145400 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 145341 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||| |||||||| | || | || | || || || ||||| Sbjct 145340 GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGAT 145281 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || |||||||| || | || | ||| || | | Sbjct 145280 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 145221 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | | || ||||||||||| | |||||| ||||| || || || || Sbjct 145220 CAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 145161 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 36249 ||| || |||||||| || | |||||||| |||| Sbjct 145160 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 147 bits (162), Expect = 7e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 36645 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 36704 || ||||| | || || ||||| || || || ||||| |||||||||||||| || | Sbjct 53806 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 53865 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCC 36764 ||||||||||| ||||||||||||||||||||||||||||| || | ||||| | || Sbjct 53866 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 53925 Query 36765 CCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 36823 || | ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 53926 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 147 bits (162), Expect = 7e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 36645 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 36704 || ||||| | || || ||||| || || || ||||| |||||||||||||| || | Sbjct 140397 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 140338 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCC 36764 ||||||||||| ||||||||||||||||||||||||||||| || | ||||| | || Sbjct 140337 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 140278 Query 36765 CCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 36823 || | ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 140277 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 36479 ACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 36538 ||| | ||||||||| |||||||| ||||| || | |||||| |||||||||||||| Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 36539 AAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594 | ||||| || || || ||||| ||||||||| ||||| || | |||||||| Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTA 52343 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 36479 ACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 36538 ||| | ||||||||| |||||||| ||||| || | |||||| |||||||||||||| Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 36539 AAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594 | ||||| || || || ||||| ||||||||| ||||| || | |||||||| Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTA 141860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150451616405532