Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1558 190 6e-44 >seq1558 Length=203828 Score = 190 bits (210), Expect = 6e-44 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 5470 ATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--C 5527 |||||| || |||||||| || |||||||| ||||| ||||| || || | ||| | Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATA 5587 ||| || | |||||||||||| || | || |||||||| | | || |||||| Sbjct 50958 TGATTCGTTTTC--AGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATA 51015 Query 5588 GCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATA 5647 || | ||| || | ||||||||||| ||||||||||| | ||||||||| || |||||| Sbjct 51016 GCTGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATA 51075 Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 ||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| Sbjct 51076 AGGATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 190 bits (210), Expect = 6e-44 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 5470 ATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--C 5527 |||||| || |||||||| || |||||||| ||||| ||||| || || | ||| | Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATA 5587 ||| || | |||||||||||| || | || |||||||| | | || |||||| Sbjct 143245 TGATTCGTTTTC--AGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATA 143188 Query 5588 GCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATA 5647 || | ||| || | ||||||||||| ||||||||||| | ||||||||| || |||||| Sbjct 143187 GCTGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATA 143128 Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 ||||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| Sbjct 143127 AGGATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 158 bits (174), Expect = 4e-34 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || |||||||||||||| || || |||||||||||||||||||| | ||| Sbjct 48803 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 48862 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || |||||||||||| | | | ||| ||||| || ||||| Sbjct 48863 GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGAT 48922 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || |||||||| || | || | || || | | Sbjct 48923 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 48982 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||||| ||| | |||||| ||||| ||| ||||| || Sbjct 48983 CAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 49042 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 5471 ||| || |||||||| || | |||||||| |||| Sbjct 49043 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 158 bits (174), Expect = 4e-34 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || || |||||||||||||| || || |||||||||||||||||||| | ||| Sbjct 145400 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 145341 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || |||||||||||| | | | ||| ||||| || ||||| Sbjct 145340 GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGAT 145281 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || |||||||| || | || | || || | | Sbjct 145280 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 145221 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||||| ||| | |||||| ||||| ||| ||||| || Sbjct 145220 CAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAA 145161 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 5471 ||| || |||||||| || | |||||||| |||| Sbjct 145160 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 114 bits (126), Expect = 4e-21 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||| | ||||||||| | |||| |||||||| || || || ||||| | ||| || || Sbjct 53799 ACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTC 53858 Query 5920 GAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 ||| || |||||||| || || |||||||| | || |||||||| || | || | Sbjct 53859 TAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGAT 53918 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || || |||| ||||||||||| || || || ||||| |||| || |||||||| || Sbjct 53919 TACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGAT 53978 Query 6040 GCCGTC 6045 || || Sbjct 53979 ACCATC 53984 Score = 114 bits (126), Expect = 4e-21 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||| | ||||||||| | |||| |||||||| || || || ||||| | ||| || || Sbjct 140404 ACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTC 140345 Query 5920 GAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 ||| || |||||||| || || |||||||| | || |||||||| || | || | Sbjct 140344 TAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGAT 140285 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || || |||| ||||||||||| || || || ||||| |||| || |||||||| || Sbjct 140284 TACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGAT 140225 Query 6040 GCCGTC 6045 || || Sbjct 140224 ACCATC 140219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152646775791588