Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1558 174 5e-39 >seq1558 Length=203828 Score = 174 bits (192), Expect = 5e-39 Identities = 213/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 25439 TAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTT 25498 |||| | || || |||||||| |||||||||||||| ||||||||||| ||||| |||| Sbjct 48789 TAGAGTTAGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTT 48848 Query 25499 CCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGG 25558 |||| ||||||| |||||||| | ||||| |||||||| | || | || | | Sbjct 48849 CCATACCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTG 48908 Query 25559 AATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTC 25618 | || || ||||| || |||||||| || ||||| | || || |||||||| || | | Sbjct 48909 AGTCTACTACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAAC 48968 Query 25619 CCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTAC 25678 | | ||| || | ||| || | | || ||||||||||| | |||||| ||||| || Sbjct 48969 CTAAAGCAGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAAC 49028 Query 25679 GGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 25729 | || || || ||| || |||||||| || | |||||||| |||| Sbjct 49029 GAGAGTTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 174 bits (192), Expect = 5e-39 Identities = 213/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 25439 TAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTT 25498 |||| | || || |||||||| |||||||||||||| ||||||||||| ||||| |||| Sbjct 145414 TAGAGTTAGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTT 145355 Query 25499 CCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGG 25558 |||| ||||||| |||||||| | ||||| |||||||| | || | || | | Sbjct 145354 CCATACCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTG 145295 Query 25559 AATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTC 25618 | || || ||||| || |||||||| || ||||| | || || |||||||| || | | Sbjct 145294 AGTCTACTACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAAC 145235 Query 25619 CCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTAC 25678 | | ||| || | ||| || | | || ||||||||||| | |||||| ||||| || Sbjct 145234 CTAAAGCAGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAAC 145175 Query 25679 GGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 25729 | || || || ||| || |||||||| || | |||||||| |||| Sbjct 145174 GAGAGTTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25728 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 25787 |||||| || |||||||| || || ||||||||||| ||||| || || | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 25788 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 25847 ||||| ||||||||||||| || | || |||||||| | | ||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 25848 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 25907 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 25908 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAAT 25958 ||| ||||||||||| || || || | ||| || |||||||| || || || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25728 ATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTG 25787 |||||| || |||||||| || || ||||||||||| ||||| || || | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 25788 AGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 25847 ||||| ||||||||||||| || | || |||||||| | | ||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 25848 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 25907 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 25908 GATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAAT 25958 ||| ||||||||||| || || || | ||| || |||||||| || || || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 156 bits (172), Expect = 1e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 || ||||| | || |||||||| || || |||||||| || ||||||||||| || | Sbjct 53806 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 53865 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 ||||||||||| |||||||||||||||||||||||||||||||| | |||| | || Sbjct 53866 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 53925 Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 26303 |||| ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 53926 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 156 bits (172), Expect = 1e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 || ||||| | || |||||||| || || |||||||| || ||||||||||| || | Sbjct 140397 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 140338 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 ||||||||||| |||||||||||||||||||||||||||||||| | |||| | || Sbjct 140337 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 140278 Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 26303 |||| ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 140277 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25959 ACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 26018 ||| | ||||||||| |||||||| ||||| || | |||||| |||||||||||||| Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 26019 AAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTA 26074 | ||||| || || || ||||| ||||||||| ||||| || | ||| |||| Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTA 52343 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25959 ACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 26018 ||| | ||||||||| |||||||| ||||| || | |||||| |||||||||||||| Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 26019 AAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTA 26074 | ||||| || || || ||||| ||||||||| ||||| || | ||| |||| Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTA 141860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151990787928408