Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1550 86.0 5e-12 seq1543 84.2 2e-11 >seq1550 Length=2811283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/154 (75%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 52044 CACCCAG-AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGG-A 52100 ||||| | || ||||||||||||| |||||| |||||| || ||||| |||||||| | Sbjct 316818 CACCCCGCAGGTGGGCGACAAGTTCGCGTCGCGGCACGGC-CAGAAGGGCACGTGCGGCA 316760 Query 52101 GC-CGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCAT 52159 | ||| | ||| |||||||||||||||| | || || | ||||| ||| |||| Sbjct 316759 TCACGTAC--ACCATGGAGGACATGCCCTTCACCGCCGAGGGCATCGTGCCGGACATCAT 316702 Query 52160 CATCAACCCCCACGCCTTTCCATCCAGGATGACC 52193 | ||||||| |||||| | || | | |||||| Sbjct 316701 CGTCAACCCGCACGCCATCCCCAGCCGCATGACC 316668 >seq1543 Length=2117744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481 ||| ||||| | |||||| | | ||| | |||||| |||||| || ||||| ||| Sbjct 2039317 GTTGAACAGCACGACGCCAACCTCGCCGCGGTAGTCCTCGTCCACGACGCCGGCGCCGGT 2039376 Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGT-AGAGGCCCG 48540 ||| || || || |||| ||||||||||| | ||| ||||| | ||||| || | || Sbjct 2039377 GTCGATGAAGTTCTTCACCGCCAGGCCGGAGCGGGGCGCCACACGGCCGTAAGTGCCCTT 2039436 Query 48541 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCC 48583 |||||| | | || |||| ||||||| || | | || |||| Sbjct 2039437 GGGGCAGC-GGATGGACAGGCCCGTCTTCACGATGCCCTTGCC 2039478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609841117934