Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1558 230 3e-55 >seq1558 Length=203828 Score = 230 bits (254), Expect = 3e-55 Identities = 220/279 (79%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 163205 ATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTC 163264 |||| ||||||||||| | |||||||| || || |||||||||||||| |||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 163265 ACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAA 163324 |||||||| | ||||| | || || || | || ||||||||||| | ||| | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 163325 CTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTA 163384 |||||||||||||| | ||||||||||||||||||||||| || || ||| || ||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 163385 AAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATG 163443 || | ||||||||||| ||| | ||| | || |||| ||||||||||| ||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATG 48841 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 ||||||||||| |||||||||||||| || ||| | ||| Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 230 bits (254), Expect = 3e-55 Identities = 220/279 (79%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 163205 ATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTC 163264 |||| ||||||||||| | |||||||| || || |||||||||||||| |||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 163265 ACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAA 163324 |||||||| | ||||| | || || || | || ||||||||||| | ||| | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 163325 CTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTA 163384 |||||||||||||| | ||||||||||||||||||||||| || || ||| || ||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 163385 AAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATG 163443 || | ||||||||||| ||| | ||| | || |||| ||||||||||| ||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATG 145362 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 ||||||||||| |||||||||||||| || ||| | ||| Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 219 bits (242), Expect = 5e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| |||| |||| ||||||||||| ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || ||||| ||| | || || || |||||||||||||||||| | || ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||||| | |||||||| ||| | ||| | ||||| ||||| | || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 163206 ||||| ||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 219 bits (242), Expect = 5e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| |||| |||| ||||||||||| ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || ||||| ||| | || || || |||||||||||||||||| | || ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||||| | |||||||| ||| | ||| | ||||| ||||| | || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 163206 ||||| ||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 158 bits (174), Expect = 1e-33 Identities = 143/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 162631 GATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGT 162690 ||||||||| | ||||| ||| ||||||| ||||| || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 162691 GCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCA 162750 ||||| | || | ||| || || || |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 162751 ACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTT 162810 |||| || |||||||| || || ||||| |||| ||||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Score = 158 bits (174), Expect = 1e-33 Identities = 143/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 162631 GATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGT 162690 ||||||||| | ||||| ||| ||||||| ||||| || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 162691 GCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCA 162750 ||||| | || | ||| || || || |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 162751 ACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTT 162810 |||| || |||||||| || || ||||| |||| ||||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 162835 CGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCT 162894 ||| |||||||| | |||| ||| |||||||||||||| |||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 162895 GCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTC 162954 || |||||| ||||||| | ||||| ||||| || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 162955 TCTGACGCAATGCCTCTTGGT 162975 ||||||| |||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 162835 CGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCT 162894 ||| |||||||| | |||| ||| |||||||||||||| |||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 162895 GCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTC 162954 || |||||| ||||||| | ||||| ||||| || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 162955 TCTGACGCAATGCCTCTTGGT 162975 ||||||| |||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553074028673520