Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1558 563 1e-155 >seq1558 Length=203828 Score = 563 bits (624), Expect = 1e-155 Identities = 733/1011 (73%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 |||||||||||| | ||| || || || || || || ||||| || ||| |||| | Sbjct 175578 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTC 175519 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || |||||| | || | || |||||| | ||||| || |||| || || ||| Sbjct 175518 CCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGG 175459 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || |||||| | ||| |||| || | |||||| |||||| | ||||||||||| Sbjct 175458 TATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 175399 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| | ||||| ||| |||||||| | |||||||||| || |||| Sbjct 175398 TCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 175339 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || ||||| || ||||| |||||||| || ||||| ||||| ||| | |||||| Sbjct 175338 GGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGT 175279 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA-- 164976 || || | |||||||||||||||| || |||||||| | || ||| ||| ||| Sbjct 175278 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT-TCA---GTAAA 175223 Query 164977 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 165034 | ||||| ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 175222 CTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATT 175163 Query 165035 CCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 165094 ||| || |||||| | ||||| || ||||||| || || || || || || || || Sbjct 175162 CCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGC 175103 Query 165095 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCA 165154 ||||| | ||| | || ||| | ||||| |||||||||||||| || ||||| ||||| Sbjct 175102 TATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCA 175043 Query 165155 TATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCAC 165214 |||||||||||||| ||| | || || | || || ||| ||||||||| || | || Sbjct 175042 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTAC 174983 Query 165215 AGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTC 165274 |||||||| ||||||| ||| || || || || || || || || || | | Sbjct 174982 TGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACCC 174923 Query 165275 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 165334 ||||||| ||||| || || |||||||| ||||| ||||| |||||||| || ||||| Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 165335 CGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 165394 ||| |||| || |||||||| || |||||||| || |||||||| || || || || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 165395 GGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 165454 |||||||||| ||||||| || | ||| | ||||| ||| | ||||||||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 165455 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 165514 ||||| || ||||| | || || ||||| || ||||| || || |||||||| || Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 165515 AAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 165574 |||||| || | || ||||| | ||||||||| |||| || || ||||| || || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 165575 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATA 165625 | || | ||||| ||||||||||| || | || ||||| || ||||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAATA 174572 Score = 192 bits (212), Expect = 7e-44 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 163598 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTC 163657 |||| ||||| |||||| | ||||||||||| || || ||||||||| | | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 163658 ACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCA 163717 |||||||| | || || ||||| || |||| || ||||| ||||| | || || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 163718 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 163777 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 163778 GTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGC 163837 |||| || ||||||||||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 163838 ATGAGCGTAACGCACACAACTTCCCACTCGA 163868 | ||||||||||| ||||||||||| || || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 192 bits (212), Expect = 7e-44 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 163598 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTC 163657 |||| ||||| |||||| | ||||||||||| || || ||||||||| | | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 163658 ACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCA 163717 |||||||| | || || ||||| || |||| || ||||| ||||| | || || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 163718 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 163777 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 163778 GTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGC 163837 |||| || ||||||||||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 163838 ATGAGCGTAACGCACACAACTTCCCACTCGA 163868 | ||||||||||| ||||||||||| || || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 |||||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || ||||| ||||| || || |||||||| |||||||| ||| | ||||| || ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTAT 163548 || | | ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 163599 |||||| || |||||||||||||| || |||||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 |||||||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || ||||| ||||| || || |||||||| |||||||| ||| | ||||| || ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTAT 163548 || | | ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 163599 |||||| || |||||||||||||| || |||||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 145 bits (160), Expect = 9e-30 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 163024 GACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 163083 || || |||||||| || || | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 163084 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 163143 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 163144 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 163203 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Score = 145 bits (160), Expect = 9e-30 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 163024 GACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 163083 || || |||||||| || || | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 163084 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 163143 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 163144 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 163203 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 163228 CGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCT 163287 ||||| |||||| | || | || ||||||||||| || |||||| |||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 163288 GCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 163347 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 163348 TCTGACGCAATGCC 163361 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 163228 CGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCT 163287 ||||| |||||| | || | || ||||||||||| || |||||| |||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 163288 GCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 163347 || || || || ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 163348 TCTGACGCAATGCC 163361 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 163010 CCCCTGTGGACAT 163022 | || || ||||| Sbjct 55247 CGCCAGTAGACAT 55235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 163010 CCCCTGTGGACAT 163022 | || || ||||| Sbjct 138956 CGCCAGTAGACAT 138968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563198631493040