Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1501 187 5e-42 seq1546 143 5e-29 >seq1501 Length=566706 Score = 187 bits (206), Expect = 5e-42 Identities = 572/878 (65%), Gaps = 50/878 (6%) Strand=Plus/Minus Query 212582 CTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCAT 212641 ||||||||| || ||||||||||||||||| |||||||||| |||| ||| | ||||| Sbjct 386093 CTTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCA- 386035 Query 212642 TGCTGTGAGTTTCTTCAGCTT---AATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTT 212698 | ||| | |||||| || || |||| || | || | ||| Sbjct 386034 ----GCGAGGT----CAGCTTGCCAAAGTTGGGGTC--------GGGCATGAAC-ACGTT 385992 Query 212699 CAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCT 212758 | | ||| |||||||| ||| | | | | | ||| ||||||||||| | | | Sbjct 385991 GAAGCTCTGGCTCTGGTCAATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCG 385932 Query 212759 CTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGAT 212818 ||| || ||||||||| |||||| | | | ||||| ||||| |||| | | Sbjct 385931 CTGCTTGATCTCCCACACCGTCTTGTACAGCCCCTTGAGCTCCTCGGGGATCTCCAGC-- 385874 Query 212819 GTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCAT---GTCCTCGTTCCAGAG 212875 | | |||| || || || | || | || | | | ||| || ||||| Sbjct 385873 -TCCAGCACGGAGCC---GTTCGCCGCCACCAGCTCGTTCTTCAGGTCGGCGGACCAGAT 385818 Query 212876 GCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 |||| || | |||| | | |||||| ||||||| | ||| || || || || Sbjct 385817 GCCCATGCGGTTCAGGTCGTGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAG 385758 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 ||| | | | ||| | ||| || ||||||||||| | || ||||||||| ||||| || Sbjct 385757 CACGCGGCGCACGTAGATGTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGAT 385698 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| | ||| ||| ||||||||||| |||||||| || ||| | ||| ||||||| Sbjct 385697 CTGCGAGGTGGAGGCGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTG 385638 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 ||||| || || ||||| |||||| || | ||| | | | | ||| || Sbjct 385637 CGCGATGCGGTTGCGCAGCTCCTCCCAGTTGCAGCGGCCGTCAACGCCGGTGGGCTTGAC 385578 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTA 213175 | ||||||||| ||||| || ||| | ||| || ||| ||| | ||| Sbjct 385577 GCCCCACATGTCGGGCTGCAGGACGCCCTGCGACACTGGCGAGCCGGCGTAGGTCTCGTA 385518 Query 213176 GGGGC---CATGCTCCTTGGCCAGCTCGCAGGACG-CCTGCAGGGCAGCGTAGTAGATGG 213231 ||||| || ||||| ||||||||||| || | ||| || ||||||| ||||| | Sbjct 385517 GGGGCCGTCACGCTCC---GCCAGCTCGCACGAGGTGCTG-AGCGCAGCGTGGTAGACGA 385462 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC 213291 || || |||| | ||| |||| |||||| || || ||||| ||| || Sbjct 385461 CCTCGAAGATCTGGCGGTTCAGCTCGGCGGCCTCGGGCGAGTCGAAGGCCATGCCCAGCA 385402 Query 213292 GTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAG 213351 | ||| || ||||| ||||| || || | ||||||||| | ||| | || | Sbjct 385401 GGATGAAGGTGTCCGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATG---- 385346 Query 213352 ACTTGGAGCACTCCTCCAAG------GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||||||| || | || | ||||| ||||| ||| ||||||||||| |||| Sbjct 385345 --TTGGAGCGCTGCGCCTTGGGGTGCGGGTAGTAGTTGACGTCAATGATCTTGTTCAGGT 385288 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 ||||||| ||| ||||| | | ||||| | |||| Sbjct 385287 TGCGGGTCACCATCTTGGTCATCTCAGCCAGCTTCTCG 385250 Score = 129 bits (142), Expect = 1e-24 Identities = 128/165 (78%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||||||||| |||| |||||| || ||||||||| | || | | ||| || Sbjct 384384 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTC 384325 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || ||| |||||||| || || |||||||| | ||| |||||||| |||||||| Sbjct 384324 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAT 384265 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCAC 213979 ||||||||| ||||||||| | ||| ||||||||||||||| Sbjct 384264 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 384220 Score = 118 bits (130), Expect = 2e-21 Identities = 107/132 (81%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| || ||||| |||||||||||| ||| |||||||||||||||||| ||| Sbjct 384935 GTGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 384876 Query 213588 TTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||||| ||| | |||| |||||||| |||||||||||| |||||||| | ||| Sbjct 384875 TTGGACTT-GCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTG 384817 Query 213647 GGACACCAGTAT 213658 || | |||| || Sbjct 384816 GGCCTCCAGGAT 384805 >seq1546 Length=2252224 Score = 143 bits (158), Expect = 5e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 ||||||||||| ||||| | ||||| ||| ||||| |||||||||||| ||||||||||| Sbjct 2099835 AGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAG 2099894 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||| || ||||||| || | || ||||||||||| || | ||| ||||| ||| Sbjct 2099895 GTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGGAG 2099954 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| ||||||||||| |||||||| || Sbjct 2099955 AAGAAAATGCCCTCCACGGCCGCGAAGGC 2099983 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| || ||||| | ||||| ||| |||||||||||||||||||||||||||||| | || Sbjct 1079638 GCACGCGAAGTCGCAGTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAG 1079579 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | | | || || | |||||| || | ||| ||||| |||||| Sbjct 1079578 CCCCGGCATCAGGCAGCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTG 1079519 Query 48250 GATGCCCTCCAC 48261 |||||||||||| Sbjct 1079518 GATGCCCTCCAC 1079507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931514658398720