Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1546 132 9e-26 seq1501 111 3e-19 >seq1546 Length=2252224 Score = 132 bits (146), Expect = 9e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 ||||| ||||| ||||| || || ||||||||||| || ||| ||| ||||| ||| | Sbjct 2099995 GAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCT-C 2099937 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||||||| || || ||||||||| || ||| |||||||||||||| Sbjct 2099936 CATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCAT 2099877 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||| | |||||||| || ||| | || || |||||| |||| Sbjct 2099876 CAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCT 2099835 Score = 104 bits (114), Expect = 4e-17 Identities = 176/249 (71%), Gaps = 7/249 (3%) Strand=Plus/Plus Query 25785 GCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAA 25844 |||||| | |||||| | ||| |||| | | | ||||||| |||||||||| Sbjct 1079395 GCTGTTCGACGCCATCCACACCATCCCCACCGTGGCTAAGAAGGCGGAGTGGGCCATGCG 1079454 Query 25845 GTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGG 25903 ||||||| | | | || ||| | ||||| ||||| | ||| || ||| |||| Sbjct 1079455 CTGGATCAGCTCCTCCAACGT---GTTCGCGGAGCGCCTGGTGGGCTTCGCCTGC-GTGG 1079510 Query 25904 AGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC 25962 |||||||| ||| ||| || || ||| ||||||||||| | ||| || | Sbjct 1079511 AGGGCATCCACTTCTCCGGCTCCTTCTGC-TCCATCTTCTGGTTGAAGAAGCGCTGCCTG 1079569 Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 ||||| ||||||| ||| ||||||| |||||||||| |||||||||| || ||| | || Sbjct 1079570 ATGCCGGGGCTGTCCTTCTCCAACGTGCTCATCAGCCGGGACGAGGGCCTGCACTGCGAC 1079629 Query 26023 TTTGCCTGC 26031 || || ||| Sbjct 1079630 TTCGCGTGC 1079638 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||| |||||||||| || | ||| ||| |||| | ||| ||| Sbjct 2100342 TTCTACGGCTTCCAGGTGGCCATCGAGAACATCCACAGCGAGATGTACTCGCTGCTGCTG 2100283 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || ||||| | ||| | |||| | |||||| |||||||| | | Sbjct 2100282 GAGAGCTACATCAAGGACCCCCAGGAGAAGCACAAGCTGTTCCACTCCATCGAGACCGTG 2100223 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATC 25851 ||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 2100222 CCCTGCATCAAGAAGAAGGCGCAGTGGGCCATGAAGTGGATC 2100181 >seq1501 Length=566706 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||||| ||| ||||| ||| || || || ||||| | | | ||| | ||| || Sbjct 385793 CAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGA 385734 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || || | || ||||||||||||||||||||| | ||| |||||||||||| Sbjct 385733 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCAT 385674 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCA 221252 ||||||||||||||| |||||||| Sbjct 385673 GGGTGCCACCAGCAGCGAGTTGCGCA 385648 Score = 100 bits (110), Expect = 5e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| ||||||||||| | | || || || | || ||| |||||| Sbjct 384384 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTC 384325 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| || | ||| |||| || ||||| | ||| |||||||| ||||||| Sbjct 384324 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAT 384265 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| ||| | ||||| |||||| ||| ||||| ||||| Sbjct 384264 GTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 384220 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 |||| |||| || ||||| || || |||||| |||||||||||| ||||||| | | Sbjct 384937 TGGTGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCT 384878 Query 221805 GATTAGACTTGCGATTGGCAG-CGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGC 221863 | || |||||||| || |||| ||||||||| ||||| |||| ||| ||||||| | Sbjct 384877 GGTTGGACTTGCGGTT-GCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACC 384819 Query 221864 TGAGCCACCAGAAT 221877 || ||| |||| || Sbjct 384818 TGGGCCTCCAGGAT 384805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 173/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGAC-TGCGTCAGGGCAGCG 221428 |||| | ||||||||| |||| | || ||| | |||| || ||| | || |||||| Sbjct 385530 CGTAGGTCTCGTAGGGGCCGTCACGCTCCGCCAGCTCGCACGAGGTGC-TGAGCGCAGCG 385472 Query 221429 TGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC-TTGGCCTCGGGAGAAGTGAAGGG 221487 ||||||| | ||| |||||| ||| || ||| ||||||||| || ||||| Sbjct 385471 TGGTAGACGACCTCGAAGATCTGGCGGTTCAG-CTCGGCGGCCTCGGGCGAGTCGAAGGC 385413 Query 221488 CATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTG 221547 ||| | ||||| ||| ||| ||||| ||||| || || | |||||||| | ||| Sbjct 385412 CATGCCCAGCAGGATGAAGGTGTCCGCCAGGCCCTGCACGCCCAGGCCGATGGGGCGGTG 385353 Query 221548 TCTCCTGTTGGA-AGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 | | ||||||| || || ||| || |||| || |||||||||| || | |||| Sbjct 385352 GCGCATGTTGGAGCGCTGCGCCTTGGGGTGCGGG-TAGTAGTTGACGTCAATGATCTTGT 385294 Query 221607 TGAGGTT 221613 | ||||| Sbjct 385293 TCAGGTT 385287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826710747520