Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1558 495 4e-135 >seq1558 Length=203828 Score = 495 bits (548), Expect = 4e-135 Identities = 715/1009 (71%), Gaps = 0/1009 (0%) Strand=Plus/Minus Query 9826 TGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTT 9885 ||||||||||||| | ||| || || || || || |||||||| || || | || || Sbjct 175579 TGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATT 175520 Query 9886 TCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTG 9945 || |||||| ||||| | ||||| ||| | ||||| ||||| || || || || Sbjct 175519 CCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATG 175460 Query 9946 GTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 10005 ||| || || || | || | | |||| | || ||| ||| ||| | ||||| ||||| Sbjct 175459 GTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 175400 Query 10006 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 10065 || || |||||| | ||||| ||| |||||||| | |||||||||| || |||| Sbjct 175399 TTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 175340 Query 10066 GGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 10125 || |||||| || ||| || ||||| || | ||||| || || || | ||||| Sbjct 175339 AGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGG 175280 Query 10126 AGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAAT 10185 || || | |||||| || || ||| | || |||||||| | || | | | | | Sbjct 175279 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGTTCAGTAAACTT 175220 Query 10186 CCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCT 10245 || || ||||| || || || || || | || |||||||| || || || ||||| Sbjct 175219 ACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATTCCT 175160 Query 10246 CATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGAT 10305 || || ||| | || || || ||||||||||||| || |||||||| || || || || Sbjct 175159 AATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGCTAT 175100 Query 10306 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 10365 ||||| ||| || | ||| |||| || || || || ||||| || || || ||||| || Sbjct 175099 CTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACAT 175040 Query 10366 GATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGT 10425 |||||| ||||||||| | | || | || | ||| || || ||||| | ||||| Sbjct 175039 GATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGT 174980 Query 10426 AGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCAC 10485 ||||||||| | | |||| || || || ||||| ||| || || | || Sbjct 174979 TGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACCCTAC 174920 Query 10486 TCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 || | ||||| || || || |||||||||||||||||||||||||| || || || || Sbjct 174919 ACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTTCGG 174860 Query 10546 AATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGG 10605 ||||||| || ||||| |||||||| ||||| ||| | || || || || | || Sbjct 174859 TGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAACTGG 174800 Query 10606 TCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTT 10665 |||||||| | ||||||| | | ||| | ||||| || | ||||||||||| || Sbjct 174799 TCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGACTT 174740 Query 10666 TGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAA 10725 ||||| |||||||| | || | ||||| |||||||| || || ||||| || || || Sbjct 174739 CGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAAAAA 174680 Query 10726 TATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAG 10785 || ||||| ||||||||| ||||||| |||||||| | ||||||||||||||| | Sbjct 174679 CATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGAACG 174620 Query 10786 CTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGATAT 10834 || || ||||| |||||||| | || | ||||| || || | |||| Sbjct 174619 TTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAATAT 174571 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8725 ATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCAC 8784 ||||| ||||| ||||||| ||| | || ||||| || || ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 8785 CCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCAT 8844 || ||||||||| | |||||||||||||| ||||| || || | || || || ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 8845 GGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTAT 8904 ||||| | |||||||| || | | ||||| || || |||| ||| || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCAT 8955 || ||| |||||||||||||| ||||||||||||||||| || |||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 187 bits (206), Expect = 3e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 8725 ATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCAC 8784 ||||| ||||| ||||||| ||| | || ||||| || || ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 8785 CCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCAT 8844 || ||||||||| | |||||||||||||| ||||| || || | || || || ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 8845 GGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTAT 8904 ||||| | |||||||| || | | ||||| || || |||| ||| || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCAT 8955 || ||| |||||||||||||| ||||||||||||||||| || |||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 176 bits (194), Expect = 5e-39 Identities = 202/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 8954 ATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGC 9013 |||| ||||||||||| | ||||||||||| || ||||| ||||| ||| | || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 9014 ATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGA 9073 | |||||| | ||||| ||||| || | || || ||||| || || | || | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 9074 CCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGAC 9133 | ||||| |||||| | || || |||||||||||||| || | | ||| |||||| | Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 9134 GAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGC 9193 | || || ||||| ||||||||| | | ||||| || | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 9194 ACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 |||| | ||||| ||||||||||| || ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 48808 Score = 176 bits (194), Expect = 5e-39 Identities = 202/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 8954 ATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGC 9013 |||| ||||||||||| | ||||||||||| || ||||| ||||| ||| | || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 9014 ATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGA 9073 | |||||| | ||||| ||||| || | || || ||||| || || | || | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 9074 CCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGAC 9133 | ||||| |||||| | || || |||||||||||||| || | | ||| |||||| | Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 9134 GAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGC 9193 | || || ||||| ||||||||| | | ||||| || | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 9194 ACGAAAGAAACGCACACAACTTCCCGCTTGAC 9225 |||| | ||||| ||||||||||| || ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGAC 145395 Score = 174 bits (192), Expect = 2e-38 Identities = 163/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 8380 GACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGT 8439 || || ||||| ||||||||| | || ||||| | ||||||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 8440 GCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCT 8499 || || | || | ||||||||||| || || ||||||||||| || |||||||| ||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 8500 TCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTC 8559 ||||| || |||||| | |||||||||||||||||||| ||| | |||| |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 8560 CTTGGCGTCT-TTGCTTATATGGGT 8583 || || || | ||| || |||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 174 bits (192), Expect = 2e-38 Identities = 163/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 8380 GACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGT 8439 || || ||||| ||||||||| | || ||||| | ||||||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 8440 GCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCT 8499 || || | || | ||||||||||| || || ||||||||||| || |||||||| ||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 8500 TCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTC 8559 ||||| || |||||| | |||||||||||||||||||| ||| | |||| |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 8560 CTTGGCGTCT-TTGCTTATATGGGT 8583 || || || | ||| || |||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516469941552000