Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1558 167 7e-37 >seq1558 Length=203828 Score = 167 bits (184), Expect = 7e-37 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 18110 ATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTG 18169 |||||| || ||||| || || || ||||||||||| || || || || | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 18170 AGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 18229 || || ||||| ||||| | || | || |||||||| | | ||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 18230 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 18289 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 18290 GATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC 18334 ||| |||||||| ||||||||||||| |||||| ||||||||||| Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACC 51122 Score = 167 bits (184), Expect = 7e-37 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 18110 ATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTG 18169 |||||| || ||||| || || || ||||||||||| || || || || | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 18170 AGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGC 18229 || || ||||| ||||| | || | || |||||||| | | ||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 18230 AGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAG 18289 | |||||| | ||||||||||| || |||||||| | ||| ||||| || |||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 18290 GATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC 18334 ||| |||||||| ||||||||||||| |||||| ||||||||||| Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACC 143081 Score = 152 bits (168), Expect = 2e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 18507 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 18566 || ||||| | || || ||||| || || || ||||| |||||||||||||| || | Sbjct 53806 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 53865 Query 18567 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 18626 ||||||||||| |||||||||||||||||||||||||||||||| | |||| | || Sbjct 53866 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 53925 Query 18627 CCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 |||| ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 53926 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 152 bits (168), Expect = 2e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 18507 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 18566 || ||||| | || || ||||| || || || ||||| |||||||||||||| || | Sbjct 140397 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 140338 Query 18567 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 18626 ||||||||||| |||||||||||||||||||||||||||||||| | |||| | || Sbjct 140337 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 140278 Query 18627 CCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 |||| ||||||||||| || || || | | ||||| || || ||||| |||||||| Sbjct 140277 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 143 bits (158), Expect = 8e-30 Identities = 201/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 17830 TTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAA 17889 |||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | || | Sbjct 48798 TTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 48857 Query 17890 GGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAA 17949 |||||| | ||||| | ||| ||||| || || || | ||| | |||| | Sbjct 48858 AGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTA 48917 Query 17950 TGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 18009 ||||||||||||||||| || || | || || |||||||| || | || | || | Sbjct 48918 CTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 48977 Query 18010 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGT 18069 | | ||| || | | || ||||||||||| |||||||| |||| | |||| Sbjct 48978 TGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 49037 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 18111 | || ||| || |||||||| || | |||||||| |||| Sbjct 49038 TGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 143 bits (158), Expect = 8e-30 Identities = 201/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 17830 TTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAA 17889 |||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| | || | Sbjct 145405 TTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 145346 Query 17890 GGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAA 17949 |||||| | ||||| | ||| ||||| || || || | ||| | |||| | Sbjct 145345 AGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTA 145286 Query 17950 TGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 18009 ||||||||||||||||| || || | || || |||||||| || | || | || | Sbjct 145285 CTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 145226 Query 18010 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGT 18069 | | ||| || | | || ||||||||||| |||||||| |||| | |||| Sbjct 145225 TGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 145166 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 18111 | || ||| || |||||||| || | |||||||| |||| Sbjct 145165 TGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151315600420452