Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1558 542 4e-149 >seq1558 Length=203828 Score = 542 bits (600), Expect = 4e-149 Identities = 730/1011 (72%), Gaps = 4/1011 (0%) Strand=Plus/Plus Query 101702 TATATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCG 101761 ||||| | |||||||| || | ||| ||||| |||||||| ||||| || ||| || | Sbjct 174570 TATATTATAGAGCGTTACCACGTGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTG 174629 Query 101762 GTTGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGT 101821 |||| || | |||| ||| ||||| | |||||| || | || ||||| || |||| Sbjct 174630 GTTGGTCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTAAGAAGAATGTTTTTAGTGT 174689 Query 101822 AGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAG 101881 |||| || ||||| || || ||||| || || | |||||||| ||||| ||||| |||| Sbjct 174690 AGAATGTTTCGAATTCAGGGTCTTCAGCAGCACGAATCTCTTGTGATACGAAGTCGTAAG 174749 Query 101882 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAG 101941 |||| | ||| ||||| | ||| | || ||| || | ||| |||| ||||| | || | Sbjct 174750 CACGTAAGTTTAGAGCTAAACCTACAACACCAATAGCACTCATCCAAAGACCAGTTACTG 174809 Query 101942 GAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTT 102001 |||| || | ||| ||||| || | ||| | || ||| || |||| ||| ||||||| Sbjct 174810 GAACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACCGAAGATTT 174869 Query 102002 GAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGA 102061 | |||||||||||||| || |||||||| || || || ||||| | ||||| | | || Sbjct 174870 GTGACCAGAAACGGTTAGCAGTAACCATAGAGTATGTTTCTTCAGCCTGTGTAGGGTTGA 174929 Query 102062 ATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACAC 102121 |||| ||| ||||| || ||||| ||||| | | ||||| || ||||| ||| Sbjct 174930 ATGCACGGAATGTGTTAGCACCGTCACCGTCTTCGAATAATGTGTTTTCAACAGTAGCAC 174989 Query 102122 CGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATG 102181 |||| || || | | | || | || | | ||| |||||||||||||| ||||||| Sbjct 174990 CGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATG 175049 Query 102182 GGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAA 102241 |||| || |||||||| ||||| || || | ||| | | ||| | || || || || | Sbjct 175050 GGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAAATGAAACGGAAGATAGCAGCTA 175109 Query 102242 CACC-AAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACA 102300 |||| |||| | || ||||||||||||| || || || | || || || || || || Sbjct 175110 CACCGAAACTA-GGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAATACT 175168 Query 102301 CTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAAT 102359 || || ||||| || || | ||||| ||||| || ||||| ||||| || | | | Sbjct 175169 GAAACGAATACAGCAATTGGTGCTGAGAAAGCAATTGCGTTGTATGGACGTAAGTTTACT 175228 Query 102360 TAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAG 102419 || | ||| | || || |||||||||||||||||||| | ||||||||||||| | Sbjct 175229 GAA-CGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACCAAATGCACCGTGTAA 175287 Query 102420 AGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTC 102479 ||| || || ||||| | || |||||||| ||| | |||||| ||||||||||| Sbjct 175288 AGCAACGAATGCCCATAAACCACCAAGTTGACACCAACGAGTGAAATCACCTTGAGCTTC 175347 Query 102480 AGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGC 102539 |||||||||| | |||||||| ||| ||||| || |||||| || || ||||| || Sbjct 175348 TGGACCCCAAACAAATAGAAGAGAGTGAGCCATACTGTTAGCAGGTGTAGAAACAGCTGC 175407 Query 102540 TGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGT 102599 ||| | ||| ||| |||||| | |||| || || | || || |||||||| ||||| Sbjct 175408 TGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGCGTATACCATGAAGT 175467 Query 102600 AGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAG 102659 | | || || || ||||| | ||| || || | ||| | |||||| || || || | Sbjct 175468 AACGAAAGTAGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACAAGGGAATAGTAA 175527 Query 102660 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 || || |||||||| || || || || || ||| | || ||||||||| Sbjct 175528 TAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCCAGTCATC 175578 Score = 183 bits (202), Expect = 4e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 103450 ATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTG 103509 |||||| ||||| |||||||| || ||||| ||||| ||||| |||||| | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 103510 AGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGC 103569 ||||| ||||||| || ||||| | | || || ||||| | |||||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 103570 ACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAG 103629 ||| | |||||||||||| || |||||||| || | ||||||||| |||||||| || Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 103630 AATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAAT 103680 ||||| ||||| |||||||| || | |||| ||||||| || || || || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 183 bits (202), Expect = 4e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 103450 ATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTG 103509 |||||| ||||| |||||||| || ||||| ||||| ||||| |||||| | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 103510 AGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGC 103569 ||||| ||||||| || ||||| | | || || ||||| | |||||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 103570 ACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAG 103629 ||| | |||||||||||| || |||||||| || | ||||||||| |||||||| || Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 103630 AATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAAT 103680 ||||| ||||| |||||||| || | |||| ||||||| || || || || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 161 bits (178), Expect = 1e-34 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 103174 AGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACC 103233 ||| | ||| || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 48802 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 48861 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 ||| ||||||| | ||||||||| ||||| | |||||||| || || | | || Sbjct 48862 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 48921 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCAT-GGTGCTAACACCAAGTGCGGTGA 103352 |||||||||||||| ||||| | |||||| ||||| | || ||| ||| | || |||| Sbjct 48922 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 48980 Query 103353 ACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGA 103412 |||| ||||| | ||| || | |||||||||| Sbjct 48981 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 49040 Query 103413 ATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCAT 103451 | || |||||||||||||| | |||||| |||||||||| Sbjct 49041 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 161 bits (178), Expect = 1e-34 Identities = 199/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 103174 AGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACC 103233 ||| | ||| || ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 145401 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 145342 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 ||| ||||||| | ||||||||| ||||| | |||||||| || || | | || Sbjct 145341 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 145282 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCAT-GGTGCTAACACCAAGTGCGGTGA 103352 |||||||||||||| ||||| | |||||| ||||| | || ||| ||| | || |||| Sbjct 145281 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 145223 Query 103353 ACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGA 103412 |||| ||||| | ||| || | |||||||||| Sbjct 145222 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 145163 Query 103413 ATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCAT 103451 | || |||||||||||||| | |||||| |||||||||| Sbjct 145162 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 152 bits (168), Expect = 7e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 103847 AGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGAT 103906 |||||||| | || | ||||||| ||||||||||||| || | |||||| || ||||| Sbjct 53806 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 53865 Query 103907 GCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCA 103966 || ||||||||||| || |||||||||||||| |||||||| || | || | || ||| Sbjct 53866 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 53925 Query 103967 CCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTC 104025 || | ||||||||||||||||| | || ||||| | || |||||||| || || || Sbjct 53926 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 152 bits (168), Expect = 7e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 103847 AGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGAT 103906 |||||||| | || | ||||||| ||||||||||||| || | |||||| || ||||| Sbjct 140397 AGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGAA 140338 Query 103907 GCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCA 103966 || ||||||||||| || |||||||||||||| |||||||| || | || | || ||| Sbjct 140337 GCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGCA 140278 Query 103967 CCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTC 104025 || | ||||||||||||||||| | || ||||| | || |||||||| || || || Sbjct 140277 CCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 103681 ACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGC 103740 ||| ||||||||| | || ||||| |||||||| || | ||||| || |||||||| || Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 103741 GGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACG 103800 || || || || || ||||| ||||| || ||| |||||| || ||||| || | ||| Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 52347 Query 103801 GTAGGACAATTCCCACTCACG 103821 | | || |||||||||||||| Sbjct 52348 GAAAGATAATTCCCACTCACG 52368 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 103681 ACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGC 103740 ||| ||||||||| | || ||||| |||||||| || | ||||| || |||||||| || Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 103741 GGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACG 103800 || || || || || ||||| ||||| || ||| |||||| || ||||| || | ||| Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 141856 Query 103801 GTAGGACAATTCCCACTCACG 103821 | | || |||||||||||||| Sbjct 141855 GAAAGATAATTCCCACTCACG 141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633501262322640