Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1558 154 4e-33 >seq1558 Length=203828 Score = 154 bits (170), Expect = 4e-33 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 || || | ||| || ||||||||||| ||||| ||||| ||||| || || | || | | Sbjct 48800 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 48859 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || |||||||| | ||||| ||||| ||||| | || | || | | ||| | Sbjct 48860 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 48919 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| ||||||||||| || |||||||| ||||| || || | || | |||| Sbjct 48920 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 48979 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||||||||| | || ||||| ||||| | ||||| || | ||| || || || Sbjct 48980 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 49039 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCC 21745 || ||| ||||||||||| || |||||||| || || Sbjct 49040 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 49077 Score = 154 bits (170), Expect = 4e-33 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 || || | ||| || ||||||||||| ||||| ||||| ||||| || || | || | | Sbjct 145403 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 145344 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || |||||||| | ||||| ||||| ||||| | || | || | | ||| | Sbjct 145343 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 145284 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| ||||||||||| || |||||||| ||||| || || | || | |||| Sbjct 145283 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 145224 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||||||||| | || ||||| ||||| | ||||| || | ||| || || || Sbjct 145223 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 145164 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCC 21745 || ||| ||||||||||| || |||||||| || || Sbjct 145163 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 145126 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21747 TGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGT 21806 |||||||| ||||| |||||||| ||||| |||||||| || |||||| | ||| | Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 21807 GAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCA 21866 || | | |||||| || ||||| || | || || || || | |||||||||||| Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 21867 GAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGA 21926 ||||| || ||||| ||||| || || ||||| | |||||| || || |||||||| Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 21927 ATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATC 21977 || ||||| || || ||||| || | |||| ||||||| || || || ||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGATC 51129 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21747 TGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGT 21806 |||||||| ||||| |||||||| ||||| |||||||| || |||||| | ||| | Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 21807 GAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCA 21866 || | | |||||| || ||||| || | || || || || | |||||||||||| Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 21867 GAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGA 21926 ||||| || ||||| ||||| || || ||||| | |||||| || || |||||||| Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 21927 ATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATC 21977 || ||||| || || ||||| || | |||| ||||||| || || || ||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGATC 143074 Score = 131 bits (144), Expect = 5e-26 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 22119 CCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177 |||||||| ||| | || || | |||||||| | ||| | |||||| | ||||| || Sbjct 53782 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 53840 Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237 |||||| | ||| || || || | ||||||||||||||||||||||||||| || ||||| Sbjct 53841 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 53900 Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297 || ||| | || | || || |||| |||||||||||||| || | || || || Sbjct 53901 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACC 53960 Query 22298 AGCGACGGGTTCTCGGATTCCATC 22321 | || ||||| ||||| ||||| Sbjct 53961 TGAAACTGGTTCACGGATACCATC 53984 Score = 131 bits (144), Expect = 5e-26 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 22119 CCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177 |||||||| ||| | || || | |||||||| | ||| | |||||| | ||||| || Sbjct 140421 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 140363 Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237 |||||| | ||| || || || | ||||||||||||||||||||||||||| || ||||| Sbjct 140362 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 140303 Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297 || ||| | || | || || |||| |||||||||||||| || | || || || Sbjct 140302 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACC 140243 Query 22298 AGCGACGGGTTCTCGGATTCCATC 22321 | || ||||| ||||| ||||| Sbjct 140242 TGAAACTGGTTCACGGATACCATC 140219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205294969240