Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1558 518 4e-142 >seq1558 Length=203828 Score = 518 bits (574), Expect = 4e-142 Identities = 718/1009 (71%), Gaps = 21/1009 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || |||||||| | |||||| |||||||| |||||||| ||| || || ||||| Sbjct 174574 TTATAGAGCGTTACCACGTGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTTG 174633 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| || | |||||| || | || ||||| |||||||||||||| || || ||||| Sbjct 174634 GTCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTAAGAAGAATGTTTTTAGTGTAGAA 174693 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 || ||||| || |||||||| || || | |||||||| ||||| |||||||| || | Sbjct 174694 TGTTTCGAATTCAGGGTCTTCAGCAGCACGAATCTCTTGTGATACGAAGTCGTAAGCACG 174753 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| || |||| |||||| | ||| |||| |||| | ||| | || ||||| Sbjct 174754 TAAGTTTAGAGCTAAACCTACAACACCAATAGCACTCATCCAAAGACCAGTTACTGGAAC 174813 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||| | |||||| | | | ||||||||| || || | ||| || || ||||| Sbjct 174814 TAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACCGAAGATTTGTGA 174873 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| || |||| |||| || |||||||| |||||||||| | |||||| Sbjct 174874 CCAGAAACGGTTAGCAGTAACCATAGAGTATGTTTCTTCAGCCTGTGTAGGGTTGAATGC 174933 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || ||| ||| ||| |||||| | ||||| Sbjct 174934 ACGGAATGTGTTAGC---------ACCGTCACC------------GTCTTCGAATAATGT 174972 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || || ||||| ||||| ||||||| ||| || |||||| | || ||||| Sbjct 174973 GTTTTCAACAGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAAC 175032 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||||||| ||||| || | ||| ||||||||||||||| | |||||| || | Sbjct 175033 ACCCATCATGTGGAATGGGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAAATGAA 175092 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| ||||| || || |||||||| ||||| |||||||||| ||||||| ||| Sbjct 175093 ACGGAAGATAGCAGCTACACCGAAACTAGGTGCAAAGAACCAACCTGATTGACCTAATGG 175152 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || || || | | ||| || || || || ||||| || | ||||||||| Sbjct 175153 GTAAATTAGGAATACTGAAACGAATACAGCAATTGGTGCTGAGAAAGCAATTGCGTTGTA 175212 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 || | | | ||| | || || ||||| || | ||||||||||| || | || Sbjct 175213 TGGACGTAAGTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACC 175272 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | || ||||| || || || ||||| ||| || ||||| |||||||| ||| Sbjct 175273 AAATGCACCGTGTAAAGCAACGAATGCCCATAAACCACCAAGTTGACACCAACGAGTGAA 175332 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||| ||||| || ||||||| || | ||| ||| |||| || | |||| Sbjct 175333 ATCACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGAGCCATACTGTTAGCAGG 175392 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 ||| || || ||||||||||||||||| || || | || |||| || | |||||| Sbjct 175393 TGTAGAAACAGCTGCTGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATG 175452 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| |||||||| ||||| || ||||||||||| | || | || || Sbjct 175453 CGTATACCATGAAGTAACGAAAGTAGTACCAGTTAACCAACCACCTAATGCAAAGTAAGC 175512 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCT 123874 |||||| | ||||| | ||| ||||| |||| |||||| ||||| ||| Sbjct 175513 ACAAGGGAATAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCT 175561 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124325 TGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGT 124384 || || ||||| |||||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 124385 GACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCT 124444 || || | || |||||||| | ||||| ||| || ||||| | |||||| ||||| ||| Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 124445 GAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGA 124504 |||||||| || || ||||| | || || || ||| ||||||||| || ||||| || Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 124505 ATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGAT 124554 ||||| || ||||||||||| |||| ||| |||||||||||||| ||||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124325 TGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGT 124384 || || ||||| |||||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 124385 GACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCT 124444 || || | || |||||||| | ||||| ||| || ||||| | |||||| ||||| ||| Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 124445 GAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGA 124504 |||||||| || || ||||| | || || || ||| ||||||||| || ||||| || Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 124505 ATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGAT 124554 ||||| || ||||||||||| |||| ||| |||||||||||||| ||||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 165 bits (182), Expect = 9e-36 Identities = 215/294 (73%), Gaps = 10/294 (3%) Strand=Plus/Plus Query 124035 TAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTT 124094 |||| | || || |||| |||||| ||||||||||| || || | || ||||| |||| Sbjct 48789 TAGAGTTAGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTT 48848 Query 124095 CCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCA--TGTTGGG---ACGATTTTTCC 124149 ||||||| ||||| || | ||| | | || |||| |||| | |||| || Sbjct 48849 CCATACCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTT--- 48905 Query 124150 GTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCA 124209 || || || || ||||||||||| ||||||||||| || |||||||||||||| || | Sbjct 48906 GTGAG--TCTACTACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGA 48963 Query 124210 GATACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAG 124269 | ||| | || || ||||| | || | || || || | |||| ||||||||| | Sbjct 48964 TAAACCTAAAGCAGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAA 49023 Query 124270 ACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACC 124323 | ||||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct 49024 TGAACGAGAGTTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 49077 Score = 165 bits (182), Expect = 9e-36 Identities = 215/294 (73%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 124035 TAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTT 124094 |||| | || || |||| |||||| ||||||||||| || || | || ||||| |||| Sbjct 145414 TAGAGTTAGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTT 145355 Query 124095 CCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCA--TGTTGGG---ACGATTTTTCC 124149 ||||||| ||||| || | ||| | | || |||| |||| | |||| || Sbjct 145354 CCATACCTAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTT--- 145298 Query 124150 GTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCA 124209 || || || || ||||||||||| ||||||||||| || |||||||||||||| || | Sbjct 145297 GTGAG--TCTACTACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGA 145240 Query 124210 GATACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAG 124269 | ||| | || || ||||| | || | || || || | |||| ||||||||| | Sbjct 145239 TAAACCTAAAGCAGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAA 145180 Query 124270 ACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACC 124323 | ||||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct 145179 TGAACGAGAGTTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 145126 Score = 131 bits (144), Expect = 2e-25 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 124697 CCCATGTATGCTGAA-ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||||||| || | | | ||| | ||||||||| ||| | | || ||||||||||| Sbjct 53782 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 53840 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 || || ||||| || || | || || |||||||| |||||||||||||| || ||||| Sbjct 53841 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 53900 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAAC 124874 ||||| || | ||| | || ||||| | |||||||||||||| || ||||| ||||| Sbjct 53901 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTA-AAGAAGAGAAC 53959 Query 124875 CCGCTACTGGTTCTCTGATTCCGTC 124899 | | |||||||| | ||| || || Sbjct 53960 CTGAAACTGGTTCACGGATACCATC 53984 Score = 131 bits (144), Expect = 2e-25 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 124697 CCCATGTATGCTGAA-ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 |||||||| || | | | ||| | ||||||||| ||| | | || ||||||||||| Sbjct 140421 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 140363 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 || || ||||| || || | || || |||||||| |||||||||||||| || ||||| Sbjct 140362 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 140303 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AGAAC 124874 ||||| || | ||| | || ||||| | |||||||||||||| || ||||| ||||| Sbjct 140302 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTA-AAGAAGAGAAC 140244 Query 124875 CCGCTACTGGTTCTCTGATTCCGTC 124899 | | |||||||| | ||| || || Sbjct 140243 CTGAAACTGGTTCACGGATACCATC 140219 Score = 127 bits (140), Expect = 2e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 124562 GGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCA 124621 |||||||| |||||||||||||| || || | ||||| |||||||||||||| | || Sbjct 52235 GGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGCT 52294 Query 124622 GCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGAT 124681 |||| |||||| ||||| ||||| ||| |||||| |||||||| ||||| | | | ||| Sbjct 52295 GCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGAT 52354 Query 124682 AGTTCCCACT 124691 | |||||||| Sbjct 52355 AATTCCCACT 52364 Score = 127 bits (140), Expect = 2e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 124562 GGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCA 124621 |||||||| |||||||||||||| || || | ||||| |||||||||||||| | || Sbjct 141968 GGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGCT 141909 Query 124622 GCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGAT 124681 |||| |||||| ||||| ||||| ||| |||||| |||||||| ||||| | | | ||| Sbjct 141908 GCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGAT 141849 Query 124682 AGTTCCCACT 124691 | |||||||| Sbjct 141848 AATTCCCACT 141839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578987124006160