Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1558 489 2e-133 >seq1558 Length=203828 Score = 489 bits (542), Expect = 2e-133 Identities = 685/958 (72%), Gaps = 2/958 (0%) Strand=Plus/Plus Query 23435 TTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATT 23494 ||||||||||||||| || |||||| |||| | || | ||| | | ||| || Sbjct 174622 TTCGTGTGGTTGGTCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTAAGAAGAATGTT 174681 Query 23495 TTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAA 23554 ||| |||||||| || || | | ||||||||||||||||||||||| || || Sbjct 174682 TTTAGTGTAGAATGTTTCGAATTCAGGGTCTTCAGCAGCACGAATCTCTTGTGATACGAA 174741 Query 23555 ATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACC 23614 || |||||||| | || ||||| | || | | ||||||| | | ||||||||| Sbjct 174742 GTCGTAAGCACGTAAGTTTAGAGCTAAACCTACAACACCAATAGCACTCATCCAAAGACC 174801 Query 23615 CATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCC 23674 | || ||||| || ||||| |||||||| | |||||| || || || ||||| || Sbjct 174802 AGTTACTGGAACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACC 174861 Query 23675 GAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 ||||||||||||||| ||||| || || |||||||| || || || || || |||| || Sbjct 174862 GAAGATTTGTGACCAGAAACGGTTAGCAGTAACCATAGAGTATGTTTCTTCAGCCTGTGT 174921 Query 23735 GGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGAC 23794 | | ||| || || ||||| || || || ||||| | | ||| || || || Sbjct 174922 AGGGTTGAATGCACGGAATGTGTTAGCACCGTCACCGTCTTCGAATAATGTGTTTTCAAC 174981 Query 23795 AGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCAT 23854 |||| | || ||||||||| | | | || | || | | ||||||||| |||||||| Sbjct 174982 AGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCAT 175041 Query 23855 ATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAAT 23914 ||||| ||||| || |||||||| || || || |||| ||| | || ||| | ||| || Sbjct 175042 GTGGAATGGGTTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAAATGAAACGGAAGAT 175101 Query 23915 CGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAG 23974 || || ||||||||||| || |||||||||||| ||| || || || || || || || Sbjct 175102 AGCAGCTACACCGAAACTAGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAG 175161 Query 23975 GAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGAT 24034 |||||| || |||||||||||||| || | || |||||||| || ||||| ||||| | Sbjct 175162 GAATACTGAAACGAATACAGCAATTGGTGCTGAGAAAGCAATTGCGTTGTATGGACGTAA 175221 Query 24035 TCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACC 24094 | | ||| || | |||||||||||| | ||| ||||| || | |||| ||||| Sbjct 175222 GTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACCAAATGCACC 175281 Query 24095 GTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCG-TTGAAAGTCCCCTT 24153 ||| | |||||| || | ||| | || |||||||| ||| || ||||| || |||| Sbjct 175282 GTGTAAAGCAACGAATGCCCATAAACCACCAAGTTGACACCAACGAGTGAAA-TCACCTT 175340 Query 24154 GAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGA 24213 ||| || |||||||||| | |||||||| ||| ||||| || |||||| || || | Sbjct 175341 GAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGAGCCATACTGTTAGCAGGTGTAGAAA 175400 Query 24214 CAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACC 24273 ||||||| || | |||||| ||| || | || ||| |||| | ||||| || |||| Sbjct 175401 CAGCTGCTGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGCGTATACC 175460 Query 24274 AACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAA 24333 | ||||| |||| || ||||| | |||||| || | |||| |||||| || | Sbjct 175461 ATGAAGTAACGAAAGTAGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACAAGGGA 175520 Query 24334 GAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTC 24391 |||| | || |||||||| || || || || || || | || |||||| || Sbjct 175521 ATAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCCAGTCATC 175578 Score = 210 bits (232), Expect = 3e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27009 ATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTG 27068 ||| || || || |||||||| || ||||||||||||||||| ||||| | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 27069 TGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGC 27128 ||| || ||||||| || ||||||| | || || ||||| | | ||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 27129 AGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAG 27188 ||||| | || ||||||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 27189 GATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGAT 27239 ||| ||||||||||| |||||||| | |||| |||| |||||||||||||| Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 210 bits (232), Expect = 3e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27009 ATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTG 27068 ||| || || || |||||||| || ||||||||||||||||| ||||| | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 27069 TGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGC 27128 ||| || ||||||| || ||||||| | || || ||||| | | ||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 27129 AGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAG 27188 ||||| | || ||||||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 27189 GATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGAT 27239 ||| ||||||||||| |||||||| | |||| |||| |||||||||||||| Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 208 bits (230), Expect = 1e-48 Identities = 205/265 (77%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | ||||| || || || | || | ||||||||||| Sbjct 48815 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 48874 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||||||||||||||| || |||||||| ||||| || | || || || ||||||||| Sbjct 48875 ATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGATTGGTTGAAGTTG 48934 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 |||||||| | ||||| ||||| || |||| ||| | || |||||||| || || | Sbjct 48935 AAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGATT 48994 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| | ||||||||| || ||||| ||||||||||| ||||| |||||| Sbjct 48995 ACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 49054 Query 26986 AAGATCAAACGACCGAAGTAGCCAT 27010 ||||| | |||||| ||||| |||| Sbjct 49055 AAGATTAGACGACCAAAGTAACCAT 49079 Score = 208 bits (230), Expect = 1e-48 Identities = 205/265 (77%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | ||||| || || || | || | ||||||||||| Sbjct 145388 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 145329 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||||||||||||||| || |||||||| ||||| || | || || || ||||||||| Sbjct 145328 ATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGATTGGTTGAAGTTG 145269 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 |||||||| | ||||| ||||| || |||| ||| | || |||||||| || || | Sbjct 145268 AAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAACCAAATACCGATT 145209 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| | ||||||||| || ||||| ||||||||||| ||||| |||||| Sbjct 145208 ACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 145149 Query 26986 AAGATCAAACGACCGAAGTAGCCAT 27010 ||||| | |||||| ||||| |||| Sbjct 145148 AAGATTAGACGACCAAAGTAACCAT 145124 Score = 172 bits (190), Expect = 7e-38 Identities = 146/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27405 AAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGA 27464 ||||||||| | || | |||||| ||||||||||||| || |||||||| || || || Sbjct 53805 AAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGA 53864 Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 || |||||||| |||||||||||||| ||||||||||| || ||| |||||| || || Sbjct 53865 AGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGC 53924 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 ||| | |||||||||||| || || | ||| ||||| | ||| |||||||| ||||| || Sbjct 53925 ACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 172 bits (190), Expect = 7e-38 Identities = 146/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 27405 AAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGA 27464 ||||||||| | || | |||||| ||||||||||||| || |||||||| || || || Sbjct 140398 AAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGA 140339 Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 || |||||||| |||||||||||||| ||||||||||| || ||| |||||| || || Sbjct 140338 AGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGC 140279 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 ||| | |||||||||||| || || | ||| ||||| | ||| |||||||| ||||| || Sbjct 140278 ACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27240 ACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGC 27299 ||| | ||||||| | || ||||| |||||||| |||| ||| || || | |||||| || Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 27300 ACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACG 27359 || ||||| |||||||| || || |||||| |||||||||||||||||||||||| Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 52347 Query 27360 ATATGAGAGTTCCCACTCACG 27380 | || | |||||||||||| Sbjct 52348 GAAAGATAATTCCCACTCACG 52368 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27240 ACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGC 27299 ||| | ||||||| | || ||||| |||||||| |||| ||| || || | |||||| || Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 27300 ACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACG 27359 || ||||| |||||||| || || |||||| |||||||||||||||||||||||| Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 141856 Query 27360 ATATGAGAGTTCCCACTCACG 27380 | || | |||||||||||| Sbjct 141855 GAAAGATAATTCCCACTCACG 141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665481439496560