Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1546 95.1 1e-14 >seq1546 Length=2252224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||| | |||||||| | || || ||| |||||||| || ||||||||||| || ||| Sbjct 2100001 TTCTCGGAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTC 2099942 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||| | || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 2099941 TGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 2099882 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||| || ||||| || ||| Sbjct 2099881 CTCATCAGCCGCGACGAGGGCCTGCAC 2099855 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||||||| | | || || || |||||||| ||| ||||||||| || ||| Sbjct 1079477 TTCGCGGAGCGCCTGGTGGGCTTCGCCTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTC 1079536 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||| | || | |||||||||||||| | || ||||| || || | |||||| || | Sbjct 1079537 TGCTCCATCTTCTGGTTGAAGAAGCGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTG 1079596 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||| || ||||| || ||| Sbjct 1079597 CTCATCAGCCGGGACGAGGGCCTGCAC 1079623 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/284 (67%), Gaps = 12/284 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||||| || ||| ||| | || ||||| | ||| ||| Sbjct 1466980 CCCGGTACCGGTAAGACCCTGCTGGCCAAGGCCGTGGCCGGTGAGGCCGGCACCCCCTTC 1467039 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | ||| | | || |||||| |||| || || ||||||||| | || Sbjct 1467040 TTCTCCTGCGCCGCCTCCGAGTTCGTGGAGGTGTTCGTGGGCGTGGGTGCCTCGCGTGTG 1467099 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 ||||| || || || | ||| || ||| || || || ||||||||||||| Sbjct 1467100 CGCGACCTGTTCGAGAAGGCC----AAGTCCAAGGCGCCCTGCATCATCTTCATTGATGA 1467155 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||| || || |||||| || ||| ||||||| ||| || | || |||||| | Sbjct 1467156 GATCGACGCCGTGGGCCGCCAGCGCGGCGCTGGCATGGGCGGC--GGCAACGACGAGCGC 1467213 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 || || || || || || || || || |||||||| ||||| || Sbjct 1467214 GAGCAGACCATCAACCAGCTGCTGACGGAGATGGACGGCTTCGA 1467257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557981807040