Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1558 201 1e-46 >seq1558 Length=203828 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 8166 ATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTG 8225 ||||||||| ||||| || || || |||||||||||||| || ||||| | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 || || | ||||||||| || | ||||| ||| || ||||||||||||||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 ||| | ||| |||||||| | ||| || || ||| ||| ||||| || |||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAAT 8396 ||||| || |||||||||||||||| ||||||||| || |||||||| || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8166 ATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTG 8225 ||||||||| ||||| || || || |||||||||||||| || ||||| | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 || || | ||||||||| || | ||||| ||| || ||||||||||||||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 ||| | ||| |||||||| | ||| || || ||| ||| ||||| || |||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAAT 8396 ||||| || |||||||||||||||| ||||||||| || |||||||| || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 131 bits (144), Expect = 2e-25 Identities = 197/280 (70%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAG 7947 || |||||||||| ||||||||||| || || | || ||||| ||||||||||||||| Sbjct 48800 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 48859 Query 7948 TTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007 || || | ||| | | ||| |||| || | | ||| | || || ||| Sbjct 48860 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 48919 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| ||||| || ||||| | ||| |||||||| || | | ||| | || ||| Sbjct 48920 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 48979 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||||| || | || || | | ||| | ||||||||| | | | |||||| Sbjct 48980 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 49039 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCAT 8167 || || || || |||||||||| | ||||||||| |||| Sbjct 49040 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 131 bits (144), Expect = 2e-25 Identities = 197/280 (70%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAG 7947 || |||||||||| ||||||||||| || || | || ||||| ||||||||||||||| Sbjct 145403 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 145344 Query 7948 TTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007 || || | ||| | | ||| |||| || | | ||| | || || ||| Sbjct 145343 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 145284 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| ||||| || ||||| | ||| |||||||| || | | ||| | || ||| Sbjct 145283 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 145224 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||||| || | || || | | ||| | ||||||||| | | | |||||| Sbjct 145223 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 145164 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCAT 8167 || || || || |||||||||| | ||||||||| |||| Sbjct 145163 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 129 bits (142), Expect = 7e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 8538 ACCCATGTAAGCAGAA-ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596 ||||||||| |||| | | || | ||||||||| | | | | || || ||||| | Sbjct 53781 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 53839 Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656 |||| || |||||||| |||| | |||||||||||||| || |||||||| | || | Sbjct 53840 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 53899 Query 8657 TAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAAC 8716 | ||||| |||| ||| | |||||||| | ||||||||||| || || | | |||| Sbjct 53900 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 53959 Query 8717 CTGCAACAGGTTCACGAATACCGTC 8741 ||| ||| |||||||| ||||| || Sbjct 53960 CTGAAACTGGTTCACGGATACCATC 53984 Score = 129 bits (142), Expect = 7e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 8538 ACCCATGTAAGCAGAA-ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596 ||||||||| |||| | | || | ||||||||| | | | | || || ||||| | Sbjct 140422 ACCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCAC 140364 Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656 |||| || |||||||| |||| | |||||||||||||| || |||||||| | || | Sbjct 140363 CGTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGA 140304 Query 8657 TAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAAC 8716 | ||||| |||| ||| | |||||||| | ||||||||||| || || | | |||| Sbjct 140303 TTGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAAC 140244 Query 8717 CTGCAACAGGTTCACGAATACCGTC 8741 ||| ||| |||||||| ||||| || Sbjct 140243 CTGAAACTGGTTCACGGATACCATC 140219 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 8397 ACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGC 8456 ||||| |||||| || |||||||||||||| || || | || || |||||||| || || Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 8457 GAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCG 8516 |||| |||| ||||||||| || |||||| ||||||||| | ||||||||| || Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 52347 Query 8517 GTATGATAACTCCCACT 8533 | | ||||| ||||||| Sbjct 52348 GAAAGATAATTCCCACT 52364 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 8397 ACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGC 8456 ||||| |||||| || |||||||||||||| || || | || || |||||||| || || Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 8457 GAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCG 8516 |||| |||| ||||||||| || |||||| ||||||||| | ||||||||| || Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 141856 Query 8517 GTATGATAACTCCCACT 8533 | | ||||| ||||||| Sbjct 141855 GAAAGATAATTCCCACT 141839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615850406079760