Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1558 531 6e-146 >seq1558 Length=203828 Score = 531 bits (588), Expect = 6e-146 Identities = 735/1028 (71%), Gaps = 8/1028 (1%) Strand=Plus/Minus Query 167011 TGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCT 167070 ||||| |||| | |||||||||||| || ||||| || || || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 167071 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 167130 || | | || || || |||||| |||| | || |||||| | ||||| |||||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 167131 TTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTT 167190 ||||| || |||||||| ||||| | || | ||| | || ||| ||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 167191 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGG 167250 | || || || ||| ||| || || | ||||| ||| ||| | || || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 167251 GGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTT 167310 ||||| ||| ||||||| |||||| | ||| |||||||| || | ||||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 167311 GTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 167370 || || | ||||| || |||| | | ||||||||||||||||| ||||||||| ||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 167371 CGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 167426 || | ||| | ||||| ||||| || ||||||||||| | || |||||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 167427 CTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTC 167486 |||||| || ||||| | || || | |||||| | ||||||||||| || Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAG 175118 Query 167487 CTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGAC 167546 ||||| || || || |||||||| ||| | | ||| ||||||| |||||||||||||| Sbjct 175117 TTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGAC 175058 Query 167547 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 167606 ||| || ||||| || ||||||||||| || ||| | | |||| ||| || | | ||| Sbjct 175057 ACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 174998 Query 167607 AATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTT 167666 || || |||| ||| || || || || || | ||||| ||||| || ||||| || Sbjct 174997 TATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATT 174938 Query 167667 TAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATT 167726 |||||| | |||| |||| ||||| || || || |||||||| || ||||| || Sbjct 174937 CCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTT 174878 Query 167727 CTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTT 167786 |||||| || |||||||| |||||||| |||||||| |||||||| ||||| ||||| Sbjct 174877 CTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTT 174818 Query 167787 ATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAA 167846 ||| ||||| || | || ||||||| | ||||| | | ||| | ||||| || Sbjct 174817 ATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA 174758 Query 167847 TCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGA 167906 | ||||||||||| ||||| || |||||||| | || || || || || || || || Sbjct 174757 CTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGA 174698 Query 167907 AACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTAT 167966 ||| ||||| ||||||||||| ||||| || |||||| |||| || ||| | || || Sbjct 174697 AACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 174638 Query 167967 CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 || ||||| || || || || ||||| || ||||| | ||||| || ||||| || Sbjct 174637 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Query 168027 ATAAAATA 168034 |||| ||| Sbjct 174577 ATAATATA 174570 Score = 232 bits (256), Expect = 7e-56 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 166475 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 166534 |||||||||| |||||| | ||||||||||||||||| ||||||||||| || || || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 166535 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 166594 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 166595 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 166654 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 166655 GTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGC 166714 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 166715 ATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 232 bits (256), Expect = 7e-56 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 166475 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 166534 |||||||||| |||||| | ||||||||||||||||| ||||||||||| || || || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 166535 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 166594 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 166595 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 166654 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 166655 GTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGC 166714 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 166715 ATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 ||||| || || ||||||| |||| | || |||||||| || ||||| || || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || ||||| ||| | || |||||||| ||||| ||||| || || ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || ||| |||||||| ||| | | | || || ||||||| |||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 |||||| ||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 ||||| || || ||||||| |||| | || |||||||| || ||||| || || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || ||||| ||| | || |||||||| ||||| ||||| || || ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || ||| |||||||| ||| | | | || || ||||||| |||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 |||||| ||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 165901 GACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 165960 || || ||||||||||| || | |||||||| | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 165961 GCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCA 166020 || || | || |||| |||||||| ||||| |||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 166021 TCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTG 166080 || || ||||| ||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 166081 ATTGGCATCTATGCCTACATGGGT 166104 | || | || |||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 165901 GACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 165960 || || ||||||||||| || | |||||||| | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 165961 GCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCA 166020 || || | || |||| |||||||| ||||| |||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 166021 TCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTG 166080 || || ||||| ||| | || ||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 166081 ATTGGCATCTATGCCTACATGGGT 166104 | || | || |||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 166105 CGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCA 166164 |||||||||||| | |||| |||| |||||||||||||||||||| ||| ||||||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 166165 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTC 166224 || ||||| ||||| || || |||||| |||| || ||| |||| |||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 166225 TCTGATGCAATGCC 166238 ||||| | ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 166105 CGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCA 166164 |||||||||||| | |||| |||| |||||||||||||||||||| ||| ||||||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 166165 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTC 166224 || ||||| ||||| || || |||||| |||| || ||| |||| |||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 166225 TCTGATGCAATGCC 166238 ||||| | ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 || |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| || Sbjct 190781 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 190840 Query 18189 CTACCTGGGGAGTT 18202 |||||| ||||||| Sbjct 190841 CTACCT-GGGAGTT 190853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 41315 GGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAAT 41374 Query 18069 CCGCTATTCTCCA 18081 ||||| |||||| Sbjct 41375 CCGCTTATCTCCA 41387 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 152888 GGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAAT 152829 Query 18069 CCGCTATTCTCCA 18081 ||||| |||||| Sbjct 152828 CCGCTTATCTCCA 152816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561237069695200