Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1505 102 1e-16 seq1550 95.1 2e-14 seq1491 89.7 7e-13 >seq1505 Length=619805 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| ||||| || || || || |||||||||||||| ||||| || Sbjct 503288 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 503229 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 503228 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 503185 >seq1550 Length=2811283 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 195301 TATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGT 195360 |||||||||||| |||| || || ||||| || || || || | | || | ||||| Sbjct 1065733 TATTGGTATCGACCTAGGCACGACCTACTCTTGCGTGGGCGTGTACAAGAACGGCCGTGT 1065792 Query 195361 AGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGA 195420 |||||||| |||| ||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 1065793 GGAGATTATTGCGAACGACCAGGGCAACCGCATCACTCCCTCGTATGTGGCCTTCACCGA 1065852 Query 195421 TAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATAC 195480 | || || || | ||||| || || || || ||| | | | ||||| | || Sbjct 1065853 CGAGGAGCGCCTGATCGGAGACGCTGCCAAGAACCAGGCTACCGTCAACCCCAAGCGCAC 1065912 Query 195481 TGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGT 195515 |||| |||| ||||| || || || ||||||| Sbjct 1065913 CGTCTACGACGTCAAGCGCCTGATCGGCCGCAAGT 1065947 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 195301 TATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGT 195360 |||||||||||| | || || || ||||| || || || || | |||| | ||||| Sbjct 1052844 TATTGGTATCGACCTGGGCACGACCTACTCTTGCGTGGGCGTGTACAAAAACGGCCGTGT 1052785 Query 195361 AGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGA 195420 ||||||||| |||| ||||| || || || | ||||| ||||| || ||||| || || Sbjct 1052784 GGAGATTATCGCGAACGACCAGGGCAATCGCATCACTCCCTCGTATGTGGCCTTCACCGA 1052725 Query 195421 TAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATAC 195480 | || || || | || || || || || || ||| | | | ||||| | || Sbjct 1052724 CGAGGAGCGCCTGATCGGCGACGCTGCCAAGAACCAGGCTACCGTCAACCCCAAGCGCAC 1052665 Query 195481 TGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGT 195515 ||| |||| ||||| || || || ||||||| Sbjct 1052664 CATCTACGACGTCAAGCGCCTGATCGGCCGCAAGT 1052630 >seq1491 Length=442363 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||| |||||||| ||||| || Sbjct 109834 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTGGAGTCTTCG 109893 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || ||| | || ||||||||||| || ||||| || Sbjct 109894 GACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGG 109937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657849588129760