Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1558 154 4e-33 >seq1558 Length=203828 Score = 154 bits (170), Expect = 4e-33 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || || |||||||| || ||||||||||| ||| || || || || ||| | || Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACC 42061 ||||| | ||||| ||||| || | ||||||||||| |||| | || | || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 42062 ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAG 42121 ||||| |||||||| || ||||||||||| |||||||| | ||| | | || | Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181 || | ||||| ||||| ||||| | |||||||| ||| | || | || || ||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 42182 GAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 ||||| ||||| ||||||||||| || ||| | || || Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 48800 Score = 154 bits (170), Expect = 4e-33 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || || |||||||| || ||||||||||| ||| || || || || ||| | || Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACC 42061 ||||| | ||||| ||||| || | ||||||||||| |||| | || | || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 42062 ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAG 42121 ||||| |||||||| || ||||||||||| |||||||| | ||| | | || | Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181 || | ||||| ||||| ||||| | |||||||| ||| | || | || || ||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 42182 GAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 ||||| ||||| ||||||||||| || ||| | || || Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 145403 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41710 GATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCA 41769 ||| || || || ||||||| |||| | || ||||| || || ||||| || |||||||| Sbjct 51129 GATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCA 51070 Query 41770 TCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCA 41829 || || |||||| | ||||| || || ||||| ||||| || ||||| |||||||| Sbjct 51069 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCA 51010 Query 41830 CGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTA 41889 |||| | || || || || | || ||||| || |||||| | | ||| ||| | Sbjct 51009 CGGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGA 50950 Query 41890 TGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCA 41940 |||||| || |||||||| ||||| |||||||| ||||| |||||||| Sbjct 50949 AGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 150 bits (166), Expect = 5e-32 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41710 GATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCA 41769 ||| || || || ||||||| |||| | || ||||| || || ||||| || |||||||| Sbjct 143074 GATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCA 143133 Query 41770 TCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCA 41829 || || |||||| | ||||| || || ||||| ||||| || ||||| |||||||| Sbjct 143134 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCA 143193 Query 41830 CGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTA 41889 |||| | || || || || | || ||||| || |||||| | | ||| ||| | Sbjct 143194 CGGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGA 143253 Query 41890 TGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCA 41940 |||||| || |||||||| ||||| |||||||| ||||| |||||||| Sbjct 143254 AGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 131 bits (144), Expect = 5e-26 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41366 GATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGA 41425 ||||| ||||| ||||| || | || || || | || |||||||||||||| |||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 41426 GCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCT 41485 || || | || | ||| || ||||| || ||||||||||||||||||||||||||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 41486 ACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTC 41545 | || || || ||| | |||||||| ||||| | |||||| | ||| | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 41546 ATTGGCGTCT-TTGCTTACATGGG 41568 | || || | ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 131 bits (144), Expect = 5e-26 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41366 GATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGA 41425 ||||| ||||| ||||| || | || || || | || |||||||||||||| |||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 41426 GCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCT 41485 || || | || | ||| || ||||| || ||||||||||||||||||||||||||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 41486 ACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTC 41545 | || || || ||| | |||||||| ||||| | |||||| | ||| | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 41546 ATTGGCGTCT-TTGCTTACATGGG 41568 | || || | ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146211694850832