Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1558 176 1e-39 >seq1558 Length=203828 Score = 176 bits (194), Expect = 1e-39 Identities = 180/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 42766 ATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCAT 42825 || || ||||| |||||||||||| | || ||||| || ||||| ||||| |||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 42826 CCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCAT 42885 || ||||| ||| | |||||||| || ||||| ||||| || || |||||||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 42886 GGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATT 42943 ||| | | || || || ||| | | |||||||| |||||||||||| ||| || Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGC--TAACG 50951 Query 42944 ATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 | || ||| ||||||||||| || || ||||| |||||||| || || ||| Sbjct 50950 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 176 bits (194), Expect = 1e-39 Identities = 180/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 42766 ATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCAT 42825 || || ||||| |||||||||||| | || ||||| || ||||| ||||| |||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 42826 CCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCAT 42885 || ||||| ||| | |||||||| || ||||| ||||| || || |||||||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 42886 GGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATT 42943 ||| | | || || || ||| | | |||||||| |||||||||||| ||| || Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGC--TAACG 143252 Query 42944 ATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 | || ||| ||||||||||| || || ||||| |||||||| || || ||| Sbjct 143253 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 154 bits (170), Expect = 4e-33 Identities = 199/273 (73%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 42995 ATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGC 43054 ||||||||||||| || || ||||||||||| || || || || || ||| || || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 43055 ACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTA 43114 ||||||| | || |||||||| || | || |||||||||||| || | || | | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 43115 CTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA-- 43172 ||||||| || ||||| || ||||| ||||| ||||||||| | || | | ||| || Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGT--AGACTCACAAGG 48902 Query 43173 TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGAT 43232 || ||| | |||||||| || || | || ||||| ||| | || | || || || Sbjct 48901 TCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAAT 48842 Query 43233 GCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 ||||||||| || || || |||||||| || || Sbjct 48841 GCACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 154 bits (170), Expect = 4e-33 Identities = 199/273 (73%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 42995 ATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGC 43054 ||||||||||||| || || ||||||||||| || || || || || ||| || || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 43055 ACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTA 43114 ||||||| | || |||||||| || | || |||||||||||| || | || | | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 43115 CTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA-- 43172 ||||||| || ||||| || ||||| ||||| ||||||||| | || | | ||| || Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGT--AGACTCACAAGG 145301 Query 43173 TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGAT 43232 || ||| | |||||||| || || | || ||||| ||| | || | || || || Sbjct 145302 TCGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAAT 145361 Query 43233 GCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 ||||||||| || || || |||||||| || || Sbjct 145362 GCACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 109 bits (120), Expect = 2e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42421 GATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGT 42480 ||||| || |||||||| || || || |||||||| || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 42481 GCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAAT 42540 || || | || | ||||||||| || || || || || | || |||||||| | Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 42541 ACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTT 42600 | || ||||| ||| | ||||| || || ||||| || || |||| | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 42601 ATCGGTATCTTCTCTTACTTGGG 42623 | ||| | | || ||| |||| Sbjct 53804 CTAGGTGTATACTGCTACATGGG 53782 Score = 109 bits (120), Expect = 2e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42421 GATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGT 42480 ||||| || |||||||| || || || |||||||| || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 42481 GCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAAT 42540 || || | || | ||||||||| || || || || || | || |||||||| | Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 42541 ACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTT 42600 | || ||||| ||| | ||||| || || ||||| || || |||| | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 42601 ATCGGTATCTTCTCTTACTTGGG 42623 | ||| | | || ||| |||| Sbjct 140399 CTAGGTGTATACTGCTACATGGG 140421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143530144463784