Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1558 149 2e-31 >seq1558 Length=203828 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26153 TGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGT 26212 || ||||| ||||| || || || ||||| ||||| || || || || | || | Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 26213 GAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCA 26272 || | | || || ||||| || | || |||||||| ||| ||||||||||| Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 26273 GCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGT 26332 | ||| | | |||||||| || ||||||||||| ||| |||||||||||||| || Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 26333 ATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 26382 || || ||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26153 TGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGT 26212 || ||||| ||||| || || || ||||| ||||| || || || || | || | Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 26213 GAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCA 26272 || | | || || ||||| || | || |||||||| ||| ||||||||||| Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 26273 GCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGT 26332 | ||| | | |||||||| || ||||||||||| ||| |||||||||||||| || Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 26333 ATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 26382 || || ||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 134 bits (148), Expect = 4e-27 Identities = 199/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 25870 AGATGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 25929 || ||| |||||||| || || ||||| ||||| |||||||||||||| ||||| | || Sbjct 48796 AGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 48855 Query 25930 GAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTAC 25989 | |||||| ||||| | | || ||||| || || || || | ||||| Sbjct 48856 TAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTAC 48915 Query 25990 TACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGA 26049 |||||| ||||| ||||| ||||| |||| ||| |||||||| || | | ||| | || Sbjct 48916 TACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGC 48975 Query 26050 TGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTT 26109 || | ||| || || | |||||||||| ||| | ||||| || | ||||| ||| Sbjct 48976 AGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTT 49035 Query 26110 ATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCC 26151 || ||| || || || || |||| | |||||||| || Sbjct 49036 GTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 49077 Score = 134 bits (148), Expect = 4e-27 Identities = 199/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 25870 AGATGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 25929 || ||| |||||||| || || ||||| ||||| |||||||||||||| ||||| | || Sbjct 145407 AGTTGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 145348 Query 25930 GAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTAC 25989 | |||||| ||||| | | || ||||| || || || || | ||||| Sbjct 145347 TAAGTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTAC 145288 Query 25990 TACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGA 26049 |||||| ||||| ||||| ||||| |||| ||| |||||||| || | | ||| | || Sbjct 145287 TACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGC 145228 Query 26050 TGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTT 26109 || | ||| || || | |||||||||| ||| | ||||| || | ||||| ||| Sbjct 145227 AGTGAACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTT 145168 Query 26110 ATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCC 26151 || ||| || || || || |||| | |||||||| || Sbjct 145167 GTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 145126 Score = 120 bits (132), Expect = 9e-23 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| |||| | |||||| | | || ||||| || || || || ||||||| |||||| Sbjct 53796 TACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTC 53855 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 ||| || | |||||||||| || ||||| || || || |||||||||||||| | || Sbjct 53856 GTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGG 53915 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 || || || |||| || || ||||| ||||| | | || || |||||||| ||||| Sbjct 53916 GATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACG 53975 Query 26719 TATGCCATC 26727 || ||||| Sbjct 53976 GATACCATC 53984 Score = 120 bits (132), Expect = 9e-23 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| |||| | |||||| | | || ||||| || || || || ||||||| |||||| Sbjct 140407 TACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTC 140348 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 ||| || | |||||||||| || ||||| || || || |||||||||||||| | || Sbjct 140347 GTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGG 140288 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 || || || |||| || || ||||| ||||| | | || || |||||||| ||||| Sbjct 140287 GATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACG 140228 Query 26719 TATGCCATC 26727 || ||||| Sbjct 140227 GATACCATC 140219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147709267143360