Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1558 228 1e-54 >seq1558 Length=203828 Score = 228 bits (252), Expect = 1e-54 Identities = 189/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || ||||||||| | || || || ||||| |||||||| || | ||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 ||||| || || || || || ||||||||||||| ||||| | || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCAT 155676 |||||| ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 228 bits (252), Expect = 1e-54 Identities = 189/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || ||||||||| | || || || ||||| |||||||| || | ||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 ||||| || || || || || ||||||||||||| ||||| | || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCAT 155676 |||||| ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 217 bits (240), Expect = 2e-51 Identities = 215/278 (77%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 155675 ATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTC 155734 |||| ||||| |||||||| |||||||| || || || ||||||||||| | | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 155735 ACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAA 155794 |||||||| | ||||| ||||| || || | || ||| |||||| | ||| | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 155795 CGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTA 155854 | |||||||||||| | |||||||||||||||||||| || ||||||||| | ||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 155855 AAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGC 155914 || | || ||||||||||| | ||||| ||| | |||||||||||||||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 155915 ACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 |||||||||||||||||||||||||||| ||| | ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 217 bits (240), Expect = 2e-51 Identities = 215/278 (77%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 155675 ATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTC 155734 |||| ||||| |||||||| |||||||| || || || ||||||||||| | | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 155735 ACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAA 155794 |||||||| | ||||| ||||| || || | || ||| |||||| | ||| | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 155795 CGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTA 155854 | |||||||||||| | |||||||||||||||||||| || ||||||||| | ||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 155855 AAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGC 155914 || | || ||||||||||| | ||||| ||| | |||||||||||||||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 155915 ACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 |||||||||||||||||||||||||||| ||| | ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 167 bits (184), Expect = 3e-36 Identities = 145/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 155101 GATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGT 155160 |||||||| |||||||| || | |||||| | | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 155161 GCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCA 155220 ||||| |||| | ||| |||||||| ||||| |||||||| || ||||||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 155221 ACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTT 155280 |||| || |||||||| ||||| |||||||||| ||||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Score = 167 bits (184), Expect = 3e-36 Identities = 145/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 155101 GATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGT 155160 |||||||| |||||||| || | |||||| | | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 155161 GCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCA 155220 ||||| |||| | ||| |||||||| ||||| |||||||| || ||||||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 155221 ACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTT 155280 |||| || |||||||| ||||| |||||||||| ||||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584823810334480