Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1558 196 1e-45 >seq1558 Length=203828 Score = 196 bits (216), Expect = 1e-45 Identities = 210/278 (76%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 40530 GAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGA 40589 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 48800 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 48859 Query 40590 CTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACT 40649 | | ||| | | || |||||||| | || ||| | | |||||||||| Sbjct 48860 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 48919 Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTA 40709 || ||||| ||||| ||||| || | ||| || |||||||| |||| ||| | | || Sbjct 48920 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 48979 Query 40710 AGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTG 40769 | ||| || || || ||||| ||||| | | |||||||||| | ||| |||||| Sbjct 48980 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 49039 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACC 40807 || ||||| ||||| || ||||| | |||||||||||| Sbjct 49040 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 49077 Score = 196 bits (216), Expect = 1e-45 Identities = 210/278 (76%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 40530 GAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGA 40589 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 145403 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAG 145344 Query 40590 CTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACT 40649 | | ||| | | || |||||||| | || ||| | | |||||||||| Sbjct 145343 TTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACT 145284 Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTA 40709 || ||||| ||||| ||||| || | ||| || |||||||| |||| ||| | | || Sbjct 145283 GATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 145224 Query 40710 AGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTG 40769 | ||| || || || ||||| ||||| | | |||||||||| | ||| |||||| Sbjct 145223 AACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 145164 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACC 40807 || ||||| ||||| || ||||| | |||||||||||| Sbjct 145163 AAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACC 145126 Score = 154 bits (170), Expect = 4e-33 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40809 TGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGT 40868 || |||||||| ||||| ||||| || |||| ||||| || || || | ||| | Sbjct 50899 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 50958 Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 ||||| |||| || || || || || | || |||||||| | ||||||||||| Sbjct 50959 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 51018 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 | || || | |||||| || || || ||||| || | ||| |||||||||||||| || Sbjct 51019 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 51078 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 |||||||||||||||||||| || | |||||||||||| || ||| Sbjct 51079 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCA 51123 Score = 154 bits (170), Expect = 4e-33 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40809 TGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGT 40868 || |||||||| ||||| ||||| || |||| ||||| || || || | ||| | Sbjct 143304 TGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGCT 143245 Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 ||||| |||| || || || || || | || |||||||| | ||||||||||| Sbjct 143244 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGCT 143185 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 | || || | |||||| || || || ||||| || | ||| |||||||||||||| || Sbjct 143184 GAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGG 143125 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 |||||||||||||||||||| || | |||||||||||| || ||| Sbjct 143124 ATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCA 143080 Score = 125 bits (138), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 41195 TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTC 41254 ||| |||| | |||||| | || || ||||| || || || |||||||||| |||||| Sbjct 53796 TACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTC 53855 Query 41255 GTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG 41314 ||| || | | |||||||| ||||||||||| || || |||||||||||||| | || Sbjct 53856 GTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGG 53915 Query 41315 AACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 | ||||| || | || || ||||| ||||| | | || || ||||| || ||||| Sbjct 53916 GATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACG 53975 Query 41375 TATGCCATC 41383 || ||||| Sbjct 53976 GATACCATC 53984 Score = 125 bits (138), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 41195 TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTC 41254 ||| |||| | |||||| | || || ||||| || || || |||||||||| |||||| Sbjct 140407 TACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTC 140348 Query 41255 GTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG 41314 ||| || | | |||||||| ||||||||||| || || |||||||||||||| | || Sbjct 140347 GTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGG 140288 Query 41315 AACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 | ||||| || | || || ||||| ||||| | | || || ||||| || ||||| Sbjct 140287 GATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACG 140228 Query 41375 TATGCCATC 41383 || ||||| Sbjct 140227 GATACCATC 140219 Score = 120 bits (132), Expect = 9e-23 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41040 CCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCT 41099 |||||||||||||| |||||||| ||||| || |||| || |||||||||||||||||| Sbjct 52229 CCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCT 52288 Query 41100 AGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTG 41159 |||||| | | |||||||| ||| || ||| |||||||| | |||||||| | | Sbjct 52289 GAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGG 52348 Query 41160 TATGAAAGTTCCCACT 41175 | || | |||||||| Sbjct 52349 AAAGATAATTCCCACT 52364 Score = 120 bits (132), Expect = 9e-23 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41040 CCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCT 41099 |||||||||||||| |||||||| ||||| || |||| || |||||||||||||||||| Sbjct 141974 CCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCT 141915 Query 41100 AGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTG 41159 |||||| | | |||||||| ||| || ||| |||||||| | |||||||| | | Sbjct 141914 GAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGG 141855 Query 41160 TATGAAAGTTCCCACT 41175 | || | |||||||| Sbjct 141854 AAAGATAATTCCCACT 141839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143699741325972