Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1558 232 8e-56 >seq1558 Length=203828 Score = 232 bits (256), Expect = 8e-56 Identities = 190/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 67637 ATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTG 67696 ||||||||| |||||||||||||| ||||||||||| ||||| |||||| | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 67697 TGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGC 67756 ||| || | ||||| ||||| | ||| | ||| |||||||| | ||||||||||||||| Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 67757 ACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAG 67816 || | |||||||||||||||||| || || || | ||| ||||||||||||||||| Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 67817 GATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAAT 67867 ||||||||| ||||||||||| |||| |||| |||| ||||||||||| || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 232 bits (256), Expect = 8e-56 Identities = 190/231 (82%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 67637 ATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTG 67696 ||||||||| |||||||||||||| ||||||||||| ||||| |||||| | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 67697 TGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGC 67756 ||| || | ||||| ||||| | ||| | ||| |||||||| | ||||||||||||||| Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 67757 ACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAG 67816 || | |||||||||||||||||| || || || | ||| ||||||||||||||||| Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 67817 GATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAAT 67867 ||||||||| ||||||||||| |||| |||| |||| ||||||||||| || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 212 bits (234), Expect = 7e-50 Identities = 216/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 67361 AGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AAGTC 67419 ||| | ||| |||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 48802 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 48861 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGG 67479 || | ||| | ||||||||||||||| | || ||| || ||| || || | Sbjct 48862 A-GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTG 48920 Query 67480 ATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGA 67539 |||||||||||||||||||||| | |||||||||||||||||| | ||| | ||||||| Sbjct 48921 ATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGA 48980 Query 67540 ACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGA 67599 |||| || | || || || | ||||| | ||||||||| | | |||||||||| Sbjct 48981 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 49040 Query 67600 AAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCAT 67638 |||| || || |||||||| | ||||| ||||| |||| Sbjct 49041 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 212 bits (234), Expect = 7e-50 Identities = 216/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 67361 AGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AAGTC 67419 ||| | ||| |||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 145401 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 145342 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGG 67479 || | ||| | ||||||||||||||| | || ||| || ||| || || | Sbjct 145341 A-GCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTG 145283 Query 67480 ATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGA 67539 |||||||||||||||||||||| | |||||||||||||||||| | ||| | ||||||| Sbjct 145282 ATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGA 145223 Query 67540 ACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGA 67599 |||| || | || || || | ||||| | ||||||||| | | |||||||||| Sbjct 145222 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 145163 Query 67600 AAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCAT 67638 |||| || || |||||||| | ||||| ||||| |||| Sbjct 145162 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 68033 AAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGT 68092 ||||||||| | || | ||||||| |||| ||||| || || |||||||| ||||||| Sbjct 53805 AAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGA 53864 Query 68093 TGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGC 68152 || |||||||| || || ||||||||||||||||||||||| ||| | || | ||||| Sbjct 53865 AGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGC 53924 Query 68153 ACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATC 68212 ||| | |||||||||||||||||| | || ||||||| ||| ||||| | ||||||||| Sbjct 53925 ACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 53984 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 68033 AAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGT 68092 ||||||||| | || | ||||||| |||| ||||| || || |||||||| ||||||| Sbjct 140398 AAGGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCGTCTAGAGA 140339 Query 68093 TGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGC 68152 || |||||||| || || ||||||||||||||||||||||| ||| | || | ||||| Sbjct 140338 AGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAAGTTGGGATTACAGC 140279 Query 68153 ACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATC 68212 ||| | |||||||||||||||||| | || ||||||| ||| ||||| | ||||||||| Sbjct 140278 ACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACCTGAAACTGGTTCACGGATACCATC 140219 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 67868 ACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC 67927 ||| | |||||| |||||||||| |||||||| |||| ||| || || ||||| ||||| Sbjct 52228 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 52287 Query 67928 GAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACG 67987 | ||||||| |||||||| ||||| |||||| |||||| ||||||||||| | ||| Sbjct 52288 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 52347 Query 67988 GTAAGAAAGTTCCCACTGACG 68008 | |||| | |||||||| ||| Sbjct 52348 GAAAGATAATTCCCACTCACG 52368 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 67868 ACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC 67927 ||| | |||||| |||||||||| |||||||| |||| ||| || || ||||| ||||| Sbjct 141975 ACCTAAAGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGC 141916 Query 67928 GAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACG 67987 | ||||||| |||||||| ||||| |||||| |||||| ||||||||||| | ||| Sbjct 141915 TGAAGCTGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACG 141856 Query 67988 GTAAGAAAGTTCCCACTGACG 68008 | |||| | |||||||| ||| Sbjct 141855 GAAAGATAATTCCCACTCACG 141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566936158703280