Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1558 563 1e-155 >seq1558 Length=203828 Score = 563 bits (624), Expect = 1e-155 Identities = 741/1026 (72%), Gaps = 8/1026 (1%) Strand=Plus/Plus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 ||||| || || |||||||| || | |||||||| |||||||| || ||| || ||| Sbjct 174572 TATTATAGAGCGTTACCACGTGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGT 174631 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || || |||| ||| ||||||| |||||| || | |||||||| || |||||| Sbjct 174632 TGGTCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTAAGAAGAATGTTTTTAGTGTAG 174691 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || ||||| || |||||||| || || | |||||||| ||||| ||||| |||||| Sbjct 174692 AATGTTTCGAATTCAGGGTCTTCAGCAGCACGAATCTCTTGTGATACGAAGTCGTAAGCA 174751 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 || | ||| ||||| | ||| | || ||| || | ||| |||||||||| | || ||| Sbjct 174752 CGTAAGTTTAGAGCTAAACCTACAACACCAATAGCACTCATCCAAAGACCAGTTACTGGA 174811 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 || || ||||| ||||| || | ||| | || || || |||| ||| ||||| || Sbjct 174812 ACTAATAACATGAAGAAGTGAAGCCAACGTTTGTTAGAGAAAGCAACACCGAAGATTTGT 174871 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| ||||| ||||||||||| ||||| |||||||| | || |||| || |||| Sbjct 174872 GACCAGAAACGGTTAGCAGTAACCATAGAGTATGTTTCTTCAGCCTGTGTAGGGTTGAAT 174931 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| ||||| || ||||| ||||| | | || || || || ||| |||| Sbjct 174932 GCACGGAATGTGTTAGCACCGTCACCGTCTTCGAATAATGTGTTTTCAACAGTAGCACCG 174991 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||| | | || ||| |||| | | ||| || ||||||||||| || || ||| Sbjct 174992 TGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGG 175051 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||| ||||| ||||| | ||| | || ||| || ||||| || | || Sbjct 175052 TTAAGTGTCCAGTTGTGGAAACCTTGGAAGAATAAAATGAAACGGAAGATAGCAGCTACA 175111 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 |||||| || || || ||||||| |||||||| | ||||| || || || || | Sbjct 175112 CCGAAACTAGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAATACTGAA 175171 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGAT 67240 || || ||||| || || | ||||| ||||| || ||||| ||||| | ||| || Sbjct 175172 ACGAATACAGCAATTGGTGCTGAGAAAGCAATTGCGTTGTATGGACGTAAGTTTACTGA- 175230 Query 67241 GAGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAG 67300 ||| || | ||||||||| ||||||||||||||||||| | | || || ||||| | Sbjct 175231 ---ACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAAACCAAATGCACCGTGTAA 175287 Query 67301 CGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTC 67360 || || || ||| | || |||||||| ||| || |||||| || |||| || Sbjct 175288 AGCAACGAATGCCCATAAACCACCAAGTTGACACCAACGAGTGAAATCACCTTGAGCTTC 175347 Query 67361 AGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGC 67420 |||||||||| | |||||||| ||| ||||| | |||||| || || ||||| || Sbjct 175348 TGGACCCCAAACAAATAGAAGAGAGTGAGCCATACTGTTAGCAGGTGTAGAAACAGCTGC 175407 Query 67421 TGTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGT 67480 ||| | || ||| ||| || | ||| || || | || || || ||||| || Sbjct 175408 TGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACCATGCGTATACCATGAAGT 175467 Query 67481 GACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAG 67540 || || ||||||||||| | ||| ||||| | ||| | |||||| || || || | Sbjct 175468 AACGAAAGTAGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACAAGGGAATAGTAA 175527 Query 67541 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATC 67600 || || |||||||| || || || || || ||| | ||||||||||||| | |||| Sbjct 175528 TAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAGCCAGTCATCAGCGTCATC 175587 Query 67601 GAACCA 67606 |||||| Sbjct 175588 GAACCA 175593 Score = 203 bits (224), Expect = 4e-47 Identities = 214/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 67842 AGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACC 67901 ||| | ||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 48802 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 48861 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 ||| ||||||| | ||||||||| || || || ||| || | | || Sbjct 48862 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 48921 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCAT-GGTGCTAACACCAAGTGCAGTGA 68020 ||||||||||||||||| || | |||||||||||| | || ||| ||| | ||||||| Sbjct 48922 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 48980 Query 68021 ACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 68080 |||| ||||| | || ||||| ||||| | ||||||||| | ||||| |||||||||| Sbjct 48981 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 49040 Query 68081 ACGATGCATACTGGAAGATCAGACGACCGAAGTATCCAT 68119 | || || || |||||||| |||||||| ||||| |||| Sbjct 49041 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 49079 Score = 203 bits (224), Expect = 4e-47 Identities = 214/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 67842 AGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACC 67901 ||| | ||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 145401 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 145342 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 ||| ||||||| | ||||||||| || || || ||| || | | || Sbjct 145341 AGCACGGTTGATGATGTCTGCCCAAGTGTTTAGTACACGACCTTGTGAGTCTACTACTGA 145282 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGT-GCTAACACCAAGTGCAGTGA 68020 ||||||||||||||||| || | |||||||||||| || | ||| ||| | ||||||| Sbjct 145281 TTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGA 145223 Query 68021 ACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 68080 |||| ||||| | || ||||| ||||| | ||||||||| | ||||| |||||||||| Sbjct 145222 ACCAAATACCGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGA 145163 Query 68081 ACGATGCATACTGGAAGATCAGACGACCGAAGTATCCAT 68119 | || || || |||||||| |||||||| ||||| |||| Sbjct 145162 AAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCAT 145124 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68118 ATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTG 68177 ||| ||||| |||||||||||||| ||||||||||||||||| |||||| | ||| Sbjct 50898 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 50957 Query 68178 GGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGC 68237 || || ||||||| |||||||| | | || |||||||| | ||||| ||||| || Sbjct 50958 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 51017 Query 68238 ACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAG 68297 ||| | || ||||| ||||| |||||||| || | ||| ||||| |||||||| || Sbjct 51018 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 51077 Query 68298 GATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAAT 68348 ||||||||| ||||||||||| || | |||| |||||||||||||||| || Sbjct 51078 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 51128 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68118 ATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTG 68177 ||| ||||| |||||||||||||| ||||||||||||||||| |||||| | ||| Sbjct 143305 ATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAAACGGTAACCTTCGTTAGC 143246 Query 68178 GGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGC 68237 || || ||||||| |||||||| | | || |||||||| | ||||| ||||| || Sbjct 143245 TGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAAAGAACCGTGCATAGC 143186 Query 68238 ACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAG 68297 ||| | || ||||| ||||| |||||||| || | ||| ||||| |||||||| || Sbjct 143185 TGAGAATAATGAACCACCGAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAG 143126 Query 68298 GATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAAT 68348 ||||||||| ||||||||||| || | |||| |||||||||||||||| || Sbjct 143125 GATGTTGTGTTCTGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAGAT 143075 Score = 167 bits (184), Expect = 3e-36 Identities = 161/204 (79%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 68491 CCCATGTATGCAA-AGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACC 68549 |||||||| ||| | | ||| | ||||||||| | | | |||||| |||||||||| Sbjct 53782 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 53840 Query 68550 ATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAAT 68609 ||||| |||||||| || || | || ||||||||||| || || ||||||||||| || Sbjct 53841 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 53900 Query 68610 TGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACC 68669 ||| || ||| | || | |||||||| | ||||||||||||||| || ||||| ||||| Sbjct 53901 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACC 53960 Query 68670 AGCAACAGGTTCACGAATACCATC 68693 | ||| |||||||| |||||||| Sbjct 53961 TGAAACTGGTTCACGGATACCATC 53984 Score = 167 bits (184), Expect = 3e-36 Identities = 161/204 (79%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68491 CCCATGTATGCAA-AGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACC 68549 |||||||| ||| | | ||| | ||||||||| | | | |||||| |||||||||| Sbjct 140421 CCCATGTA-GCAGTATACACCTAGAAGGAAGTGACAAACGATAAGTTGGTAAGGACCACC 140363 Query 68550 ATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAAT 68609 ||||| |||||||| || || | || ||||||||||| || || ||||||||||| || Sbjct 140362 GTTGTATAACCACTCGTCTAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGAT 140303 Query 68610 TGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACC 68669 ||| || ||| | || | |||||||| | ||||||||||||||| || ||||| ||||| Sbjct 140302 TGCGTTAGAAGTTGGGATTACAGCACCTGTAATGATGTTGTTACCGTAAAGAAGAGAACC 140243 Query 68670 AGCAACAGGTTCACGAATACCATC 68693 | ||| |||||||| |||||||| Sbjct 140242 TGAAACTGGTTCACGGATACCATC 140219 Score = 105 bits (116), Expect = 8e-18 Identities = 77/88 (88%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 35497 TAACAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGA 35556 ||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||| ||| Sbjct 190865 TAACATAAATATAACTCCC-AGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGA 190807 Query 35557 TAGCTCTGCCGCTGAGCTACTGAGGATT 35584 | ||||| || |||||||||||| |||| Sbjct 190806 TCGCTCTACCACTGAGCTACTGAAGATT 190779 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68355 AGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGC 68414 |||||| |||||||||| |||||||| |||| ||| || || | ||| || || || || Sbjct 52234 AGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGC 52293 Query 68415 TGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGA 68474 ||| || || || || ||||| || ||| |||||| ||||||||||| | ||| | || Sbjct 52294 TGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGA 52353 Query 68475 AAGTTCCCATTCACG 68489 | |||||| ||||| Sbjct 52354 TAATTCCCACTCACG 52368 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68355 AGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGC 68414 |||||| |||||||||| |||||||| |||| ||| || || | ||| || || || || Sbjct 141969 AGGCATACCGTCAGAGAATGAACCTTGGCCGATAGGGTAAACTAAGAATACAGCTGAAGC 141910 Query 68415 TGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGA 68474 ||| || || || || ||||| || ||| |||||| ||||||||||| | ||| | || Sbjct 141909 TGCAGCTACTGGAGCTGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGA 141850 Query 68475 AAGTTCCCATTCACG 68489 | |||||| ||||| Sbjct 141849 TAATTCCCACTCACG 141835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 68694 GATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCA 68752 |||||| || || |||||||||||||| |||| |||||| || ||| ||||| | ||| | Sbjct 55234 GATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGAT-GTTGCAGTAAGAA 55292 Query 68753 GCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCA 68812 | |||||||| | || ||||||||||| | ||| | ||||| || || ||||| | Sbjct 55293 GACATGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTGA 55352 Query 68813 CCCATTCGCAGAA 68825 ||| || || || Sbjct 55353 TCCACTCACAAAA 55365 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 68694 GATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCA 68752 |||||| || || |||||||||||||| |||| |||||| || |||| |||| | ||| | Sbjct 138969 GATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTGATG-TTGCAGTAAGAA 138911 Query 68753 GCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCA 68812 | |||||||| | || ||||||||||| | ||| | ||||| || || ||||| | Sbjct 138910 GACATGGGATCATGATTACACCGAACCAACCGATGTATAAACGGTTTTCAGTTGAAGTGA 138851 Query 68813 CCCATTCGCAGAA 68825 ||| || || || Sbjct 138850 TCCACTCACAAAA 138838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572043259240560