Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1558 542 3e-149 >seq1558 Length=203828 Score = 542 bits (600), Expect = 3e-149 Identities = 728/1011 (72%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 |||||||||||| | ||| || || || || || || ||||| || || |||| | Sbjct 175578 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTC 175519 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || |||||| | || | || |||||| | ||||| || |||| ||||| ||| Sbjct 175518 CCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGG 175459 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || ||| | |||| ||| || | || ||| |||||| | ||||||||||| Sbjct 175458 TATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 175399 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| || ||||| ||| |||||||| | |||||||||| || |||| Sbjct 175398 TCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 175339 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || ||||| || ||||| |||||||| || |||||| || || || | |||||| Sbjct 175338 GGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGT 175279 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA-- 159663 || || | |||||||||||||||| |||||||||||| | || ||| ||| ||| Sbjct 175278 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT-TCA---GTAAA 175223 Query 159664 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159721 | ||||| ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 175222 CTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATT 175163 Query 159722 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 159781 ||| || |||||||| ||||| || ||||||| || || || || || || || || Sbjct 175162 CCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGC 175103 Query 159782 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCA 159841 ||||| | ||| | || ||| | ||||| || ||||||||||| | || || ||||| Sbjct 175102 TATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCA 175043 Query 159842 TATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTAC 159901 |||||||| ||||||||| | |||||| || || | |||| || || || | ||| Sbjct 175042 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTAC 174983 Query 159902 TGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 159961 ||| || |||||| | | ||||| || || || || || || || || | | Sbjct 174982 TGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACCC 174923 Query 159962 AACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160021 || || | || || || ||||||||||| ||||| ||||| |||||||| || ||||| Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 160022 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTAT 160081 |||| |||| || |||||||| || |||||||| ||||||||||| || || || || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 160082 GGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGA 160141 |||||||||| ||||||| || | || | ||||| || | ||||||||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201 |||||| |||||||| | || || ||||| || ||||| || || |||||||| || Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 160202 AAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261 |||||| || | |||||||| | ||||| ||| |||| || || ||||| || || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 160262 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATA 160312 | || | ||||| ||||||||||| || | || ||||| || ||||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAATA 174572 Score = 232 bits (256), Expect = 7e-56 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 158286 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 158345 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 158346 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 158405 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 158406 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 158465 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 158466 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158525 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 158526 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 232 bits (256), Expect = 7e-56 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 158286 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 158345 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 158346 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 158405 |||||||| | ||||| ||||| || |||| || |||||||| || | || | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 158406 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 158465 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 158466 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158525 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 158526 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158236 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACAT 158287 |||||| ||||||||||| ||||| || || ||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158236 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACAT 158287 |||||| ||||||||||| ||||| || || ||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 157712 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157771 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 157772 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 157831 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 157832 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 157891 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 157892 ATTGGTATCTA-TGCATACATGGG 157914 | ||| | || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 157712 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157771 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 157772 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 157831 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 157832 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 157891 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 157892 ATTGGTATCTA-TGCATACATGGG 157914 | ||| | || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157916 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCT 157975 |||||||||||| | || | ||||||||||||||| || |||||| |||||| || || Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 157976 GCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 158035 |||||||| |||||||| || ||||||||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 158036 TCCGATGCTATGCCTCTTGGT 158056 || || | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 157916 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCT 157975 |||||||||||| | || | ||||||||||||||| || |||||| |||||| || || Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 157976 GCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 158035 |||||||| |||||||| || ||||||||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 158036 TCCGATGCTATGCCTCTTGGT 158056 || || | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 157698 CCCCTGTGGACATC 157711 | || || |||||| Sbjct 55247 CGCCAGTAGACATC 55234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 157698 CCCCTGTGGACATC 157711 | || || |||||| Sbjct 138956 CGCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548363720408560