Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1558 560 1e-154 >seq1558 Length=203828 Score = 560 bits (620), Expect = 1e-154 Identities = 743/1031 (72%), Gaps = 8/1031 (1%) Strand=Plus/Minus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCT 152415 ||||| |||| | |||||||||||| |||||||||||| || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 152416 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 152475 || | | || || || |||||| |||| | || |||||| | ||||| |||||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 152476 TTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 152535 |||| || |||||||| || || || || | ||| || | || || ||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 152536 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 | || || || |||||||| || || | ||||| ||| |||||||| || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 ||||| || |||||||| |||||| | ||| ||| || || || | ||||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCA 152715 || || | ||||| || || | | |||| |||||||||||||| ||||||||| | || Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 152716 CGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 152771 ||| || ||| | ||||| ||||| || ||||| ||||| | || || ||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 152772 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 152831 || ||| || || || || ||||| | |||||||| ||||||| || || || Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAG 175118 Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891 |||||| || || || |||||||| ||| || | ||| | ||||| |||||||||||||| Sbjct 175117 TTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGAC 175058 Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 | | || || || || |||||||||||||| ||| |||| || | || || | | ||| Sbjct 175057 ACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 174998 Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011 ||||| |||| ||| || || || || || | |||| ||||| || ||||| || Sbjct 174997 TATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATT 174938 Query 153012 CAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTT 153071 | || ||| || || || | ||||| || || || |||||||||||||||||||| Sbjct 174937 CCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTT 174878 Query 153072 CTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCT 153131 |||||| || || || || ||||||| || ||||| |||||||| ||||| ||| | Sbjct 174877 CTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTT 174818 Query 153132 GTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAA 153191 || || || || | |||||||||| | ||||||| | | ||| | ||||| || Sbjct 174817 ATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA 174758 Query 153192 TCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGA 153251 | ||||||||||| || ||||| ||||| || | || | ||||| |||||||| || Sbjct 174757 CTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGA 174698 Query 153252 GACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGT 153311 || ||||| || || || || ||| | ||||||||| ||||||||||| |||| || Sbjct 174697 AACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 174638 Query 153312 TGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| || || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 174637 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Query 153372 GTGATATACTT 153382 | ||||| || Sbjct 174577 ATAATATATTT 174567 Score = 232 bits (256), Expect = 7e-56 Identities = 217/276 (79%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 151547 GGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCAC 151606 ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 151607 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACC 151666 |||||| | || || ||||| || ||||||| ||||||||||| | ||| | || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 151667 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAA 151726 |||||||||||| | |||||||||||||||||||| || | | || || || Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 151727 GTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCAC 151786 || || ||||| ||||||||| | | |||||||| | ||||||||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 151787 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 151822 |||||||| ||||||||||||||||| ||| | ||| Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 232 bits (256), Expect = 7e-56 Identities = 217/276 (79%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 151547 GGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCAC 151606 ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 151607 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACC 151666 |||||| | || || ||||| || ||||||| ||||||||||| | ||| | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 151667 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAA 151726 |||||||||||| | |||||||||||||||||||| || | | || || || Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 151727 GTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCAC 151786 || || ||||| ||||||||| | | |||||||| | ||||||||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 151787 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 151822 |||||||| ||||||||||||||||| ||| | ||| Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 151316 ATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAC 151375 || ||||| || ||||||| |||| | || ||||||||||| |||||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 151376 CCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCAC 151435 || ||||| ||| | ||||| |||||||| |||||||| || | ||||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 151436 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTAT 151495 |||||| | |||||||| || | | ||||| || || |||||||| || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACA 151545 |||||| ||||||||||||||||| || |||||||| || || || || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 151316 ATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAC 151375 || ||||| || ||||||| |||| | || ||||||||||| |||||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 151376 CCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCAC 151435 || ||||| ||| | ||||| |||||||| |||||||| || | ||||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 151436 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTAT 151495 |||||| | |||||||| || | | ||||| || || |||||||| || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACA 151545 |||||| ||||||||||||||||| || |||||||| || || || || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 178 bits (196), Expect = 1e-39 Identities = 164/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 150971 GATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGT 151030 ||||| ||||||||||| ||| | |||||||| | ||||||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 151031 GCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCC 151090 ||||| | || |||||||||| |||||||| |||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 151091 TCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTG 151150 ||||| || || ||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 151151 ATTGGTATCTA-TGCTTACATGGGT 151174 | ||| | || ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 178 bits (196), Expect = 1e-39 Identities = 164/205 (80%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 150971 GATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGT 151030 ||||| ||||||||||| ||| | |||||||| | ||||||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 151031 GCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCC 151090 ||||| | || |||||||||| |||||||| |||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 151091 TCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTG 151150 ||||| || || ||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 151151 ATTGGTATCTA-TGCTTACATGGGT 151174 | ||| | || ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 151175 CGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCT 151234 |||||||||||| | |||| ||| || ||||||||||| |||||| || || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 151235 GCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 151294 |||||||| ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 151295 TCTGATGCAATGCC 151308 ||||| | ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 151175 CGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCT 151234 |||||||||||| | |||| ||| || ||||||||||| |||||| || || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 151235 GCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 151294 |||||||| ||||| || || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 151295 TCTGATGCAATGCC 151308 ||||| | ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 41314 TGGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAA 41373 Query 9832 TCCGCTATTCTCCA 9845 |||||| |||||| Sbjct 41374 TCCGCTTATCTCCA 41387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 |||||||| ||| | || || ||| | |||||| | || |||||||||||||||| | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGC-TTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| ||| ||| | | ||||| || | |||||| | || |||||||||||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 55247 Query 150958 CCCTGTGGACATC 150970 || || |||||| Sbjct 55246 GCCAGTAGACATC 55234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 |||||||| ||| | || || ||| | |||||| | || |||||||||||||||| | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTG-CTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| ||| ||| | | |||| ||| | |||||| | || |||||||||||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCC 138956 Query 150958 CCCTGTGGACATC 150970 || || |||||| Sbjct 138957 GCCAGTAGACATC 138969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 |||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 152889 TGGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAA 152830 Query 9832 TCCGCTATTCTCCA 9845 |||||| |||||| Sbjct 152829 TCCGCTTATCTCCA 152816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549611696103760