Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1558 544 9e-150 >seq1558 Length=203828 Score = 544 bits (602), Expect = 9e-150 Identities = 722/1002 (72%), Gaps = 8/1002 (1%) Strand=Plus/Minus Query 158787 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTA 158846 || ||||||||| | || |||||||| || || || ||||| || | | || | Sbjct 175578 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATTC 175519 Query 158847 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 158906 || |||||| |||| | || |||||| | ||||| || ||||||| ||| ||| Sbjct 175518 CCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATGG 175459 Query 158907 TATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTT 158966 ||||| ||||| | |||||||| || | || ||| ||||| | |||||||| ||| Sbjct 175458 TATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 175399 Query 158967 TCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 159026 || || || ||| | ||||| ||| |||||||| || | |||||||| || |||||| Sbjct 175398 TCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 175339 Query 159027 GGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGT 159086 || |||||| | ||| |||||||| || | ||| || || || | |||||| Sbjct 175338 GGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGGT 175279 Query 159087 GCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA-- 159144 || |||| ||||||||||||||||||| ||||||||| | || ||| || ||| Sbjct 175278 GCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT----TCAGTAAA 175223 Query 159145 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159202 | ||||| ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 175222 CTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTATT 175163 Query 159203 CCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGC 159262 ||| || |||||| | ||||| || ||||||| || || || || || || || || Sbjct 175162 CCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTGC 175103 Query 159263 AATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCA 159322 || ||| | ||| | | ||| | ||||| |||||||| |||||||| ||||| ||||| Sbjct 175102 TATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCA 175043 Query 159323 TATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCAC 159382 |||||||| ||||||||| | |||||| || | ||| ||||||||| || | || Sbjct 175042 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTAC 174983 Query 159383 AGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTC 159442 |||||||| ||||||| ||| || || || || ||||| || || || | | Sbjct 174982 TGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACCC 174923 Query 159443 AACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 159502 || || | || || || || |||||||| ||||| ||||| |||||||| || ||||| Sbjct 174922 TACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCTT 174863 Query 159503 CGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTAT 159562 ||| |||| || |||||||| || |||||||| ||||| ||||| || || || || | Sbjct 174862 CGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAAC 174803 Query 159563 GGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 159622 ||||| |||| |||||| || | ||| | ||||| || | ||||||||||| Sbjct 174802 TGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACGA 174743 Query 159623 TTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAA 159682 ||||| |||||||| | || || ||||| || ||||| ||||| |||||||| || Sbjct 174742 CTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAA 174683 Query 159683 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 159742 ||||||||||| || ||||| | ||||||||| |||| || || ||||| || || Sbjct 174682 AAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGA 174623 Query 159743 AAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 | || | ||||| |||||||| ||||| | |||||||| Sbjct 174622 ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGC 174581 Score = 208 bits (230), Expect = 8e-49 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 157528 ATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCAT 157587 |||||||||||||| |||| ||| |||| ||||| ||||| ||||| || |||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 157588 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 157647 || ||||||||| | || |||||||| ||||||||||| || || ||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 157648 GGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTAT 157707 || | | |||||||| || | | |||||||||||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 157708 GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACA 157757 |||||| ||||||||||||||||| || |||||||| || ||||| || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 208 bits (230), Expect = 8e-49 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 157528 ATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCAT 157587 |||||||||||||| |||| ||| |||| ||||| ||||| ||||| || |||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 157588 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 157647 || ||||||||| | || |||||||| ||||||||||| || || ||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 157648 GGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTAT 157707 || | | |||||||| || | | |||||||||||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 157708 GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACA 157757 |||||| ||||||||||||||||| || |||||||| || ||||| || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 197 bits (218), Expect = 2e-45 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 157759 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC 157818 |||||||| ||||| || ||||||||||||||||| ||||||||| | | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 157819 TTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 157878 |||||| | || || ||||| || |||| || ||||||||||| | || || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 157879 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 157938 |||||||||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 157939 GTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 157998 || | ||||| |||||||| || | ||||| ||| | ||||||||||| ||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 157999 GAGCGTAACGCACACAACTTCCCACTGGA 158027 ||||||||||| ||||||||||| || || Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 197 bits (218), Expect = 2e-45 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 157759 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCAC 157818 |||||||| ||||| || ||||||||||||||||| ||||||||| | | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 157819 TTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 157878 |||||| | || || ||||| || |||| || ||||||||||| | || || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 157879 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 157938 |||||||||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 157939 GTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 157998 || | ||||| |||||||| || | ||||| ||| | ||||||||||| ||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 157999 GAGCGTAACGCACACAACTTCCCACTGGA 158027 ||||||||||| ||||||||||| || || Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 165 bits (182), Expect = 9e-36 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 157183 GACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGT 157242 || ||||| || ||||||||| | |||||||| | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 157243 GCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCA 157302 || || | || |||| |||||||||||||||||||||||||| || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 157303 TCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCT 157361 || || || |||||| | |||||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Score = 165 bits (182), Expect = 9e-36 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 157183 GACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGT 157242 || ||||| || ||||||||| | |||||||| | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 157243 GCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCA 157302 || || | || |||| |||||||||||||||||||||||||| || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 157303 TCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCT 157361 || || || |||||| | |||||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 157387 CGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCG 157446 |||||||||||| | |||| ||||||||||||||| || |||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 157447 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 157506 || ||||| ||||| || || |||||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 157507 TCCGATGCTATGCCTCTTGGT 157527 || || | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 157387 CGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCG 157446 |||||||||||| | |||| ||||||||||||||| || |||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 157447 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 157506 || ||||| ||||| || || |||||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 157507 TCCGATGCTATGCCTCTTGGT 157527 || || | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545262980796640