Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1501 224 1e-53 seq1546 98.7 1e-15 seq1535 89.7 5e-13 >seq1501 Length=566706 Score = 224 bits (248), Expect = 1e-53 Identities = 559/840 (67%), Gaps = 38/840 (5%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 |||||||| ||||||||||| |||||||||||| ||||||| |||||| ||||| ||| Sbjct 386089 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAG 386030 Query 148011 GACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | | ||| || | | |||| |||| |||| || || ||||||||||||| Sbjct 386029 G---TCAGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCA 385973 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124 ||| | ||||| ||||| |||||||| || | || |||| ||| |||||||| Sbjct 385972 ATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCT---GCTTGATCTCCCAC 385916 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCG 148184 ||||||||||||||| ||||| | ||||| || || | | |||| |||||| Sbjct 385915 ACCGTCTTGTACAGCCCCTTGAGCTCCTCGGGGAT---CTCCAGCTCCAGCACGGAGCCG 385859 Query 148185 CGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCA 148244 ||| | | || || || ||| | | | | | | | ||||||| Sbjct 385858 TTCGCCGCCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCG 385799 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 | | ||| | ||| || ||||| |||||||||| |||||||| |||| || | | Sbjct 385798 TGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATG 385739 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 || || | || ||||| ||||||||||||||| ||||||| ||| | || ||| Sbjct 385738 TTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTG 385679 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT---TTTGCGCTTC 148421 |||||| || ||||||||||||||||||| ||| | | || ||||| | Sbjct 385678 GGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATGCGGTTGCG---C 385622 Query 148422 AGAGCCGCCCAGTCCCAGAG-----CGGCGACGGTG----TCACGTTCCACATGTCGTAC 148472 || || |||||| ||| | | || ||||| | ||| |||||||||| | Sbjct 385621 AGCTCCTCCCAGTTGCAGCGGCCGTCAACGCCGGTGGGCTTGACGCCCCACATGTCGGGC 385562 Query 148473 TGCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||||| | ||| | || | | || ||| |||| | ||| || |||| | | Sbjct 385561 TGCAGGACGCC-CTGCGACACTGGCGAGCCGGCGTAGGTCTCGTAGGGGCCGTCACGCTC 385503 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 |||||| ||||| | |||||| ||| ||| | |||| || || | ||| Sbjct 385502 CGCCAGCTCGCACGAGGTGCTGAGCGCAGCGTGGTAGACGACCTCGAAGATCTGGCGGTT 385443 Query 148592 GAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 |||| | || | |||| ||| | | ||| | |||| | | || | ||| || Sbjct 385442 ---CAGCTCGGCGGCCTCGGGCGAGTCGAAGGCCATGCCCAGCAGGATGAAGGTGTCCGC 385386 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 |||||||| ||||||| ||| ||||| ||||| ||||||||| | |||| | Sbjct 385385 CAGGCCCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGCTGCGCCTTGGG 385326 Query 148709 GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAAT 148768 | |||| |||| |||| ||| |||||||||| || ||||| ||||| ||| || || Sbjct 385325 GTGCGGGTAGTAGTTGACGTCAATGATCTTGTTCAGGTTGCGGGTCACCATCTTGGTCAT 385266 Score = 138 bits (152), Expect = 1e-27 Identities = 210/292 (72%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| | ||||| | |||||| ||| ||| ||||| ||||| ||||| || | Sbjct 384934 TGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGT 384875 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 || ||||| |||||| |||||||||||||||||| || ||| || |||||||| | Sbjct 384874 TGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGGG 384815 Query 148984 TTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCCT 149040 |||| ||| || | | ||| | ||||||||||| | || || || |||| |||| Sbjct 384814 CCTCCAGGATGGCAAACCA--CAGCTGCTGCGCGCGCACCACGCGGCGCG-AGCGGCCCT 384758 Query 149041 CCTGCTCGTA-TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099 |||||||||| | || ||||| ||||| ||| |||| || |||| ||| | || ||| Sbjct 384757 CCTGCTCGTACTTGAG-GTACAGGCGCTCAAACTCCTCACCCCAGCAGTCGGCCAGGCCG 384699 Query 149100 GGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCT 149151 || || || ||||| | || |||| | |||||| | ||| |||| Sbjct 384698 GGCGCCTCGTTGGGGCAGAACAGGCTCCACTCCTTGTCCGCCTCCACACGCT 384647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 149631 TGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA 149690 |||||||| | || |||||||| ||||| ||||| || |||||| |||| ||| | Sbjct 383430 TGGATGCCGACCGCCACGCGCATGAGCATGTGCTGGGGGCGCTCCACCACCTTGCCGTCG 383371 Query 149691 ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCG 149750 || |||| |||| | || || |||||| |||||||||| | ||||||||||||| Sbjct 383370 ATGCGCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGTAGTCGTAGTCAAAGTCG 383311 Query 149751 CGGCCGT 149757 ||| ||| Sbjct 383310 CGGTCGT 383304 >seq1546 Length=2252224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 || ||| || ||||| |||||||||||||||||| || ||||||||| || || Sbjct 2099837 CATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGT 2099896 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||||| |||| |||| | || ||| || || Sbjct 2099897 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGGAGAA 2099956 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||| | |||||||||| || ||||| |||| |||||| Sbjct 2099957 GAAAATGCCCTCCACGGCCGCGAAGGCCACCAGGCGCTC 2099995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 120393 CTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTG 120452 || || ||| || | | ||| |||||||| |||||| | |||| | | || | Sbjct 2099388 CTGCAGCGAGATCATCTCCATGAACTCGAAGGGGTTGACCACGTTGTATTGCTTAGCGCA 2099447 Query 120453 GCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACT-CGCACATG-GACTGC 120510 ||||| | || ||||| |||||||| ||||||| ||||||| ||| ||| | | || Sbjct 2099448 GCCCAGCGACACCAGCAGGCGGTCCGCCACAAACTGGATGTACTGCGC-CATCAGGCGGC 2099506 Query 120511 GCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCC 120570 ||||||||| | || ||||||||| |||| |||| | ||||||| |||||| ||| Sbjct 2099507 T-GTTCATGCCGATCAGGTCCACCGGCAGCGCCTCCGTGCAGAACTCCTGCTCAATCTCC 2099565 Query 120571 ACCGCCTCC 120579 ||||||||| Sbjct 2099566 ACCGCCTCC 2099574 >seq1535 Length=1731330 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 1340493 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 1340552 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||| |||| || ||||||||||| || || |||||| Sbjct 1340553 CGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCT 1340589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411385379920